Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIG3P49916 AC006210.2-201ENST00000367074 1545 ntBASIC5.62□□□□□ -1.51
LIG3P49916 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIG3P49916 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIG3P49916 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
LIG3P49916 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC5.62□□□□□ -1.51
LIG3P49916 Z95327.2-201ENST00000414579 1873 ntBASIC5.62□□□□□ -1.51
LIG3P49916 AL450345.1-202ENST00000605741 3881 ntBASIC5.62□□□□□ -1.51
LIG3P49916 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
LIG3P49916 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.62□□□□□ -1.51
LIG3P49916 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
LIG3P49916 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIG3P49916 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIG3P49916 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.61□□□□□ -1.51
LIG3P49916 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIG3P49916 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIG3P49916 SYF2-202ENST00000354361 926 ntTSL 2 BASIC5.61□□□□□ -1.51
LIG3P49916 RNA5SP326-201ENST00000363209 110 ntBASIC5.61□□□□□ -1.51
LIG3P49916 RNU5A-8P-201ENST00000364102 114 ntBASIC5.61□□□□□ -1.51
LIG3P49916 SNORA51.2-201ENST00000364595 132 ntBASIC5.61□□□□□ -1.51
LIG3P49916 RNA5SP132-201ENST00000364725 118 ntBASIC5.61□□□□□ -1.51
LIG3P49916 RNU6-996P-201ENST00000365438 107 ntBASIC5.61□□□□□ -1.51
LIG3P49916 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIG3P49916 AL049697.2-201ENST00000403708 294 ntBASIC5.61□□□□□ -1.51
LIG3P49916 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.61□□□□□ -1.51
LIG3P49916 RNU2-62P-201ENST00000410868 191 ntBASIC5.61□□□□□ -1.51
LIG3P49916 RPSAP35-201ENST00000413753 818 ntBASIC5.61□□□□□ -1.51
LIG3P49916 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC5.61□□□□□ -1.51
LIG3P49916 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIG3P49916 AC009302.1-201ENST00000417147 390 ntBASIC5.61□□□□□ -1.51
LIG3P49916 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.61□□□□□ -1.51
LIG3P49916 AC069213.2-201ENST00000420238 366 ntBASIC5.61□□□□□ -1.51
LIG3P49916 MTCO3P46-201ENST00000425787 232 ntBASIC5.61□□□□□ -1.51
LIG3P49916 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.61□□□□□ -1.51
LIG3P49916 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.61□□□□□ -1.51
LIG3P49916 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.61□□□□□ -1.51
LIG3P49916 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIG3P49916 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.61□□□□□ -1.51
LIG3P49916 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIG3P49916 RN7SL346P-201ENST00000491561 294 ntBASIC5.61□□□□□ -1.51
LIG3P49916 RN7SL591P-201ENST00000496150 292 ntBASIC5.61□□□□□ -1.51
LIG3P49916 NIPA2P2-201ENST00000496376 1083 ntBASIC5.61□□□□□ -1.51
LIG3P49916 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC5.61□□□□□ -1.51
LIG3P49916 ATP5LP3-201ENST00000514223 304 ntBASIC5.61□□□□□ -1.51
LIG3P49916 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.61□□□□□ -1.51
LIG3P49916 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
LIG3P49916 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.61□□□□□ -1.51
LIG3P49916 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC5.61□□□□□ -1.51
LIG3P49916 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIG3P49916 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC5.61□□□□□ -1.51
LIG3P49916 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.61□□□□□ -1.51
LIG3P49916 AC015720.2-201ENST00000567709 334 ntBASIC5.61□□□□□ -1.51
LIG3P49916 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.61□□□□□ -1.51
LIG3P49916 AC010928.3-201ENST00000587712 541 ntBASIC5.61□□□□□ -1.51
LIG3P49916 AC007687.1-201ENST00000602704 304 ntBASIC5.61□□□□□ -1.51
LIG3P49916 YWHAQP7-201ENST00000603536 658 ntBASIC5.61□□□□□ -1.51
LIG3P49916 AL050343.2-201ENST00000607338 280 ntBASIC5.61□□□□□ -1.51
LIG3P49916 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIG3P49916 AC022467.1-201ENST00000614738 749 ntBASIC5.61□□□□□ -1.51
LIG3P49916 AC083843.3-201ENST00000623679 2186 ntBASIC5.61□□□□□ -1.51
LIG3P49916 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
LIG3P49916 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
LIG3P49916 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
LIG3P49916 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.61□□□□□ -1.51
LIG3P49916 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
LIG3P49916 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.61□□□□□ -1.51
LIG3P49916 AC126323.6-202ENST00000568092 3511 ntBASIC5.61□□□□□ -1.51
LIG3P49916 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
LIG3P49916 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIG3P49916 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.6□□□□□ -1.51
LIG3P49916 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.6□□□□□ -1.51
LIG3P49916 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.6□□□□□ -1.51
LIG3P49916 OR4G1P-203ENST00000641984 1631 ntBASIC5.6□□□□□ -1.51
LIG3P49916 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIG3P49916 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIG3P49916 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIG3P49916 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC5.6□□□□□ -1.51
LIG3P49916 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.6□□□□□ -1.51
LIG3P49916 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIG3P49916 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
LIG3P49916 RN7SKP160-201ENST00000363804 340 ntBASIC5.6□□□□□ -1.51
LIG3P49916 RNU2-15P-201ENST00000410692 191 ntBASIC5.6□□□□□ -1.51
LIG3P49916 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC5.6□□□□□ -1.51
LIG3P49916 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.6□□□□□ -1.51
LIG3P49916 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.6□□□□□ -1.51
LIG3P49916 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC5.6□□□□□ -1.51
LIG3P49916 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.6□□□□□ -1.51
LIG3P49916 AC073465.2-201ENST00000440938 498 ntBASIC5.6□□□□□ -1.51
LIG3P49916 AC019185.1-201ENST00000442718 389 ntBASIC5.6□□□□□ -1.51
LIG3P49916 NANOGP10-201ENST00000453325 895 ntBASIC5.6□□□□□ -1.51
LIG3P49916 RPS4XP10-201ENST00000465034 731 ntBASIC5.6□□□□□ -1.51
LIG3P49916 RPL7P19-201ENST00000469948 618 ntBASIC5.6□□□□□ -1.51
LIG3P49916 EIF4EP3-201ENST00000498782 656 ntBASIC5.6□□□□□ -1.51
LIG3P49916 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC5.6□□□□□ -1.51
LIG3P49916 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.6□□□□□ -1.51
LIG3P49916 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.6□□□□□ -1.51
LIG3P49916 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC5.6□□□□□ -1.51
LIG3P49916 AC023050.3-201ENST00000541142 333 ntBASIC5.6□□□□□ -1.51
LIG3P49916 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.6□□□□□ -1.51
LIG3P49916 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms