Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AL592494.2-201ENST00000425455 1548 ntBASIC3.4□□□□□ -1.87
SCN4AP35499 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC3.4□□□□□ -1.87
SCN4AP35499 AP006437.1-201ENST00000641440 3685 ntBASIC3.4□□□□□ -1.87
SCN4AP35499 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SCN4AP35499 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
SCN4AP35499 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SCN4AP35499 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
SCN4AP35499 RNA5SP289-201ENST00000362332 137 ntBASIC3.4□□□□□ -1.87
SCN4AP35499 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
SCN4AP35499 RNU6-1263P-201ENST00000384601 106 ntBASIC3.4□□□□□ -1.87
SCN4AP35499 AL138827.1-201ENST00000402666 306 ntBASIC3.4□□□□□ -1.87
SCN4AP35499 AIMP1P1-201ENST00000418670 937 ntBASIC3.4□□□□□ -1.87
SCN4AP35499 XKRYP6-201ENST00000440468 1116 ntBASIC3.4□□□□□ -1.87
SCN4AP35499 XKRYP3-201ENST00000442113 1116 ntBASIC3.4□□□□□ -1.87
SCN4AP35499 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.4□□□□□ -1.87
SCN4AP35499 AL162389.1-201ENST00000449233 177 ntBASIC3.4□□□□□ -1.87
SCN4AP35499 AL590639.1-201ENST00000456484 337 ntBASIC3.4□□□□□ -1.87
SCN4AP35499 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.4□□□□□ -1.87
SCN4AP35499 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.39□□□□□ -1.87
SCN4AP35499 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SCN4AP35499 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SCN4AP35499 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SCN4AP35499 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC3.39□□□□□ -1.87
SCN4AP35499 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SCN4AP35499 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.39□□□□□ -1.87
SCN4AP35499 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.39□□□□□ -1.87
SCN4AP35499 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.39□□□□□ -1.87
SCN4AP35499 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC3.39□□□□□ -1.87
SCN4AP35499 AC245166.1-201ENST00000521012 253 ntBASIC3.39□□□□□ -1.87
SCN4AP35499 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.39□□□□□ -1.87
SCN4AP35499 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
SCN4AP35499 MTND2P13-201ENST00000577438 1039 ntBASIC3.39□□□□□ -1.87
SCN4AP35499 BNIP3P7-201ENST00000605641 516 ntBASIC3.39□□□□□ -1.87
SCN4AP35499 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.39□□□□□ -1.87
SCN4AP35499 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SCN4AP35499 AC092079.1-201ENST00000558620 1985 ntBASIC3.39□□□□□ -1.87
SCN4AP35499 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
SCN4AP35499 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.38□□□□□ -1.87
SCN4AP35499 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.38□□□□□ -1.87
SCN4AP35499 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.38□□□□□ -1.87
SCN4AP35499 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SCN4AP35499 TPTE2P1-204ENST00000435256 593 ntBASIC3.38□□□□□ -1.87
SCN4AP35499 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.38□□□□□ -1.87
SCN4AP35499 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SCN4AP35499 RN7SL442P-201ENST00000473804 320 ntBASIC3.38□□□□□ -1.87
SCN4AP35499 AC108078.3-201ENST00000502633 489 ntBASIC3.38□□□□□ -1.87
SCN4AP35499 OR5H3P-201ENST00000502817 919 ntBASIC3.38□□□□□ -1.87
SCN4AP35499 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.38□□□□□ -1.87
SCN4AP35499 RNU6-991P-201ENST00000516168 107 ntBASIC3.38□□□□□ -1.87
SCN4AP35499 AC104027.1-201ENST00000521887 300 ntBASIC3.38□□□□□ -1.87
SCN4AP35499 ATP5F1P5-201ENST00000526403 760 ntBASIC3.38□□□□□ -1.87
SCN4AP35499 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.38□□□□□ -1.87
SCN4AP35499 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC3.38□□□□□ -1.87
SCN4AP35499 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC3.38□□□□□ -1.87
SCN4AP35499 AL845331.3-202ENST00000562856 261 ntBASIC3.38□□□□□ -1.87
SCN4AP35499 CTSLP2-204ENST00000629029 392 ntBASIC3.38□□□□□ -1.87
SCN4AP35499 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
SCN4AP35499 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
SCN4AP35499 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.38□□□□□ -1.87
SCN4AP35499 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.37□□□□□ -1.87
SCN4AP35499 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
SCN4AP35499 AL590290.1-201ENST00000405336 380 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC3.37□□□□□ -1.87
SCN4AP35499 AC009963.1-201ENST00000417265 157 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 PTP4A1P1-201ENST00000420539 515 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 UBE2D3P1-201ENST00000436669 444 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC3.37□□□□□ -1.87
SCN4AP35499 RNA5SP148-201ENST00000516527 94 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 RNU6-551P-201ENST00000516661 103 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 SNORD39.2-201ENST00000579995 76 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 AP000919.1-202ENST00000581139 1264 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 AC007318.2-201ENST00000620999 243 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
SCN4AP35499 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
SCN4AP35499 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.37□□□□□ -1.87
SCN4AP35499 RPL32P35-201ENST00000415214 394 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 B3GNT2P1-201ENST00000434960 952 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.37□□□□□ -1.87
SCN4AP35499 IFNA11P-201ENST00000446352 526 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 RPL23AP23-201ENST00000452590 471 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 VTA1P2-201ENST00000520205 911 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 AP001646.1-201ENST00000527936 915 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 AC108206.1-201ENST00000570186 4159 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 PNPT1P2-201ENST00000456768 2050 ntBASIC3.37□□□□□ -1.87
SCN4AP35499 GABRG2-229ENST00000641017 3628 ntBASIC3.36□□□□□ -1.87
SCN4AP35499 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
SCN4AP35499 AC107021.2-201ENST00000567714 2095 ntBASIC3.36□□□□□ -1.87
SCN4AP35499 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
SCN4AP35499 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
SCN4AP35499 MIR764-201ENST00000390811 85 ntBASIC3.36□□□□□ -1.87
SCN4AP35499 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC3.36□□□□□ -1.87
SCN4AP35499 HMGB3P23-201ENST00000414981 585 ntBASIC3.36□□□□□ -1.87
SCN4AP35499 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC3.36□□□□□ -1.87
SCN4AP35499 RPS15AP6-201ENST00000420703 385 ntBASIC3.36□□□□□ -1.87
SCN4AP35499 HMGB3P10-201ENST00000434734 572 ntBASIC3.36□□□□□ -1.87
SCN4AP35499 OR52A4P-203ENST00000498233 1014 ntBASIC3.36□□□□□ -1.87
SCN4AP35499 AC021146.5-201ENST00000503544 545 ntBASIC3.36□□□□□ -1.87
SCN4AP35499 KLHL2P1-201ENST00000508691 521 ntBASIC3.36□□□□□ -1.87
SCN4AP35499 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.36□□□□□ -1.87
SCN4AP35499 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms