Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 ACTG1P13-201ENST00000486987 1043 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA9P31269 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA9P31269 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXA9P31269 RNU6-1102P-201ENST00000516149 96 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 RN7SKP289-201ENST00000517244 295 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA9P31269 AC090136.1-201ENST00000520009 240 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 PSMA2P1-201ENST00000526365 646 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 OR8L1P-201ENST00000534005 955 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA9P31269 AL389895.1-201ENST00000554127 252 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA9P31269 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXA9P31269 AC233266.2-201ENST00000567067 528 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 MIR4513-201ENST00000581077 86 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 AL671309.1-201ENST00000603750 544 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA9P31269 AC018692.3-201ENST00000623929 123 ntBASIC3.41□□□□□ -1.86
HOXA9P31269 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA9P31269 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA9P31269 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXA9P31269 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXA9P31269 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA9P31269 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA9P31269 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXA9P31269 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
HOXA9P31269 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.4□□□□□ -1.86
HOXA9P31269 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HOXA9P31269 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA9P31269 RNU1-70P-201ENST00000362618 164 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA9P31269 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXA9P31269 EIF5P1-201ENST00000400019 1231 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 HMGB3P18-201ENST00000406327 590 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 RNA5SP229-201ENST00000410809 99 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXA9P31269 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXA9P31269 EI24P1-201ENST00000416584 867 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 COTL1P1-201ENST00000422309 375 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 BX890604.2-201ENST00000427883 474 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 AL158071.1-201ENST00000430315 461 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 HMGB1P45-201ENST00000435986 653 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA9P31269 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA9P31269 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXA9P31269 RN7SKP60-201ENST00000516985 239 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 RPL12P22-201ENST00000519073 490 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA9P31269 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA9P31269 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXA9P31269 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.4□□□□□ -1.87
HOXA9P31269 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA9P31269 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA9P31269 MIR2682-201ENST00000580305 110 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 AC006504.3-201ENST00000586818 523 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXA9P31269 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA9P31269 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXA9P31269 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXA9P31269 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXA9P31269 KATNBL1P5-201ENST00000605015 517 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 AC015849.2-201ENST00000605738 409 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 AC099778.2-201ENST00000610904 211 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.4□□□□□ -1.87
HOXA9P31269 AC005156.1-201ENST00000613371 573 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 AL512506.1-201ENST00000613918 449 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 MIR1264-201ENST00000616374 69 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 AC243756.2-201ENST00000618406 463 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 AC090617.9-201ENST00000623751 147 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 AC092184.1-201ENST00000625042 715 ntBASIC3.4□□□□□ -1.87
HOXA9P31269 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
HOXA9P31269 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA9P31269 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
HOXA9P31269 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA9P31269 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXA9P31269 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXA9P31269 ZNF807-201ENST00000328088 1707 ntBASIC3.39□□□□□ -1.87
HOXA9P31269 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXA9P31269 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA9P31269 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA9P31269 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA9P31269 Y_RNA.110-201ENST00000363220 99 ntBASIC3.39□□□□□ -1.87
HOXA9P31269 HNRNPDP2-201ENST00000406475 478 ntBASIC3.39□□□□□ -1.87
HOXA9P31269 RNU2-72P-201ENST00000411175 163 ntBASIC3.39□□□□□ -1.87
HOXA9P31269 RNU4-74P-201ENST00000411280 161 ntBASIC3.39□□□□□ -1.87
HOXA9P31269 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
HOXA9P31269 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA9P31269 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.39□□□□□ -1.87
HOXA9P31269 AC236972.1-201ENST00000433225 199 ntBASIC3.39□□□□□ -1.87
HOXA9P31269 TRAPPC13P1-201ENST00000435991 1062 ntBASIC3.39□□□□□ -1.87
HOXA9P31269 AL662791.1-201ENST00000441992 928 ntBASIC3.39□□□□□ -1.87
HOXA9P31269 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXA9P31269 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXA9P31269 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.39□□□□□ -1.87
HOXA9P31269 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
HOXA9P31269 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC3.39□□□□□ -1.87
HOXA9P31269 RNU6-1004P-201ENST00000516584 111 ntBASIC3.39□□□□□ -1.87
HOXA9P31269 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms