Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
BDNFP23560 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
BDNFP23560 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
BDNFP23560 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
BDNFP23560 RNU4-6P-201ENST00000410804 122 ntBASIC4.32□□□□□ -1.72
BDNFP23560 OSTCP5-201ENST00000425293 453 ntBASIC4.32□□□□□ -1.72
BDNFP23560 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
BDNFP23560 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.32□□□□□ -1.72
BDNFP23560 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.32□□□□□ -1.72
BDNFP23560 BMS1P19-201ENST00000433925 393 ntBASIC4.32□□□□□ -1.72
BDNFP23560 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.32□□□□□ -1.72
BDNFP23560 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.32□□□□□ -1.72
BDNFP23560 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC4.32□□□□□ -1.72
BDNFP23560 RPL36AP13-201ENST00000457490 317 ntBASIC4.32□□□□□ -1.72
BDNFP23560 AC012181.1-201ENST00000479895 423 ntBASIC4.32□□□□□ -1.72
BDNFP23560 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.32□□□□□ -1.72
BDNFP23560 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC4.32□□□□□ -1.72
BDNFP23560 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.32□□□□□ -1.72
BDNFP23560 FTH1P21-201ENST00000512179 511 ntBASIC4.32□□□□□ -1.72
BDNFP23560 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.32□□□□□ -1.72
BDNFP23560 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC4.32□□□□□ -1.72
BDNFP23560 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
BDNFP23560 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.32□□□□□ -1.72
BDNFP23560 AP005205.1-201ENST00000563503 508 ntBASIC4.32□□□□□ -1.72
BDNFP23560 LARP7P2-201ENST00000575306 125 ntBASIC4.32□□□□□ -1.72
BDNFP23560 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC4.32□□□□□ -1.72
BDNFP23560 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.32□□□□□ -1.72
BDNFP23560 AC005014.3-201ENST00000605985 190 ntBASIC4.32□□□□□ -1.72
BDNFP23560 MIR6875-201ENST00000617506 72 ntBASIC4.32□□□□□ -1.72
BDNFP23560 MIR7702-201ENST00000621931 59 ntBASIC4.32□□□□□ -1.72
BDNFP23560 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
BDNFP23560 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
BDNFP23560 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
BDNFP23560 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
BDNFP23560 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
BDNFP23560 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
BDNFP23560 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
BDNFP23560 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
BDNFP23560 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
BDNFP23560 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
BDNFP23560 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
BDNFP23560 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
BDNFP23560 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
BDNFP23560 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.31□□□□□ -1.72
BDNFP23560 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
BDNFP23560 SNORD35B-201ENST00000363660 87 ntBASIC4.31□□□□□ -1.72
BDNFP23560 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.31□□□□□ -1.72
BDNFP23560 SNORA37-201ENST00000384504 129 ntBASIC4.31□□□□□ -1.72
BDNFP23560 RPS3AP26-201ENST00000398259 784 ntBASIC4.31□□□□□ -1.72
BDNFP23560 AL590704.1-201ENST00000402856 794 ntBASIC4.31□□□□□ -1.72
BDNFP23560 EIF4EP1-201ENST00000422311 642 ntBASIC4.31□□□□□ -1.72
BDNFP23560 EZH2P1-201ENST00000431167 291 ntBASIC4.31□□□□□ -1.72
BDNFP23560 NEK4P1-201ENST00000433383 879 ntBASIC4.31□□□□□ -1.72
BDNFP23560 HSPE1P28-201ENST00000443139 211 ntBASIC4.31□□□□□ -1.72
BDNFP23560 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.31□□□□□ -1.72
BDNFP23560 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
BDNFP23560 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.31□□□□□ -1.72
BDNFP23560 AC090453.1-201ENST00000495560 436 ntBASIC4.31□□□□□ -1.72
BDNFP23560 RPL29P14-201ENST00000495837 428 ntBASIC4.31□□□□□ -1.72
BDNFP23560 AC096571.1-202ENST00000506634 735 ntBASIC4.31□□□□□ -1.72
BDNFP23560 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.31□□□□□ -1.72
BDNFP23560 AC093853.1-201ENST00000515689 483 ntBASIC4.31□□□□□ -1.72
BDNFP23560 RNU7-143P-201ENST00000516781 65 ntBASIC4.31□□□□□ -1.72
BDNFP23560 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.31□□□□□ -1.72
BDNFP23560 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC4.31□□□□□ -1.72
BDNFP23560 CR383656.7-201ENST00000548164 174 ntBASIC4.31□□□□□ -1.72
BDNFP23560 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.31□□□□□ -1.72
BDNFP23560 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.31□□□□□ -1.72
BDNFP23560 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.31□□□□□ -1.72
BDNFP23560 AL121834.1-201ENST00000572284 509 ntBASIC4.31□□□□□ -1.72
BDNFP23560 AC025627.2-201ENST00000576220 160 ntBASIC4.31□□□□□ -1.72
BDNFP23560 MIR5186-201ENST00000577504 120 ntBASIC4.31□□□□□ -1.72
BDNFP23560 AL139395.1-201ENST00000603662 160 ntBASIC4.31□□□□□ -1.72
BDNFP23560 AC114878.2-201ENST00000604863 1251 ntBASIC4.31□□□□□ -1.72
BDNFP23560 AC243773.3-201ENST00000613270 256 ntBASIC4.31□□□□□ -1.72
BDNFP23560 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
BDNFP23560 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
BDNFP23560 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.3□□□□□ -1.72
BDNFP23560 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 MTND4P10-201ENST00000446199 1363 ntBASIC4.3□□□□□ -1.72
BDNFP23560 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
BDNFP23560 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
BDNFP23560 OR5H2-201ENST00000355273 945 ntBASIC4.3□□□□□ -1.72
BDNFP23560 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
BDNFP23560 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
BDNFP23560 SNORA60-201ENST00000362396 134 ntBASIC4.3□□□□□ -1.72
BDNFP23560 RNU1-108P-201ENST00000362556 161 ntBASIC4.3□□□□□ -1.72
BDNFP23560 RNU6-1155P-201ENST00000363554 107 ntBASIC4.3□□□□□ -1.72
BDNFP23560 RN7SKP280-201ENST00000364196 304 ntBASIC4.3□□□□□ -1.72
BDNFP23560 MIR620-201ENST00000385232 95 ntBASIC4.3□□□□□ -1.72
BDNFP23560 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC4.3□□□□□ -1.72
BDNFP23560 RPL7P30-201ENST00000420888 709 ntBASIC4.3□□□□□ -1.72
BDNFP23560 RPL27AP8-201ENST00000424277 446 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms