Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC1.61□□□□□ -2.15
APOBP04114 AL353997.5-201ENST00000618886 171 ntBASIC1.61□□□□□ -2.15
APOBP04114 METTL8-218ENST00000638989 876 ntTSL 5 BASIC1.61□□□□□ -2.15
APOBP04114 METTL8-219ENST00000640734 726 ntTSL 2 BASIC1.61□□□□□ -2.15
APOBP04114 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC1.61□□□□□ -2.15
APOBP04114 AC097634.1-201ENST00000604491 2467 ntBASIC1.61□□□□□ -2.15
APOBP04114 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
APOBP04114 MIR148B-201ENST00000362252 99 ntBASIC1.61□□□□□ -2.15
APOBP04114 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
APOBP04114 AL590290.1-201ENST00000405336 380 ntBASIC1.61□□□□□ -2.15
APOBP04114 YPEL5P1-201ENST00000419731 367 ntBASIC1.61□□□□□ -2.15
APOBP04114 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC1.61□□□□□ -2.15
APOBP04114 MTCO3P11-201ENST00000455103 774 ntBASIC1.61□□□□□ -2.15
APOBP04114 RN7SL75P-201ENST00000461926 281 ntBASIC1.61□□□□□ -2.15
APOBP04114 RNU4ATAC3P-201ENST00000516699 126 ntBASIC1.61□□□□□ -2.15
APOBP04114 IGKV2D-23-201ENST00000518179 286 ntBASIC1.61□□□□□ -2.15
APOBP04114 AL391156.1-201ENST00000554965 554 ntBASIC1.61□□□□□ -2.15
APOBP04114 AC009570.1-201ENST00000609599 745 ntBASIC1.61□□□□□ -2.15
APOBP04114 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.61□□□□□ -2.15
APOBP04114 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC1.61□□□□□ -2.15
APOBP04114 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC1.61□□□□□ -2.15
APOBP04114 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC1.6□□□□□ -2.15
APOBP04114 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
APOBP04114 AC109315.1-201ENST00000584143 1347 ntBASIC1.6□□□□□ -2.15
APOBP04114 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC1.6□□□□□ -2.15
APOBP04114 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC1.6□□□□□ -2.15
APOBP04114 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
APOBP04114 U8.13-201ENST00000390842 128 ntBASIC1.6□□□□□ -2.15
APOBP04114 AC127526.1-201ENST00000417526 366 ntBASIC1.6□□□□□ -2.15
APOBP04114 RPS12P2-201ENST00000439728 269 ntBASIC1.6□□□□□ -2.15
APOBP04114 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC1.6□□□□□ -2.15
APOBP04114 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC1.6□□□□□ -2.15
APOBP04114 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.6□□□□□ -2.15
APOBP04114 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC1.6□□□□□ -2.15
APOBP04114 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
APOBP04114 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
APOBP04114 Y_RNA.796-201ENST00000364268 102 ntBASIC1.6□□□□□ -2.15
APOBP04114 Y_RNA.799-201ENST00000364992 102 ntBASIC1.6□□□□□ -2.15
APOBP04114 RNA5SP425-201ENST00000410336 112 ntBASIC1.6□□□□□ -2.15
APOBP04114 RNA5SP107-201ENST00000411358 122 ntBASIC1.6□□□□□ -2.15
APOBP04114 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC1.6□□□□□ -2.15
APOBP04114 AL590639.1-201ENST00000456484 337 ntBASIC1.6□□□□□ -2.15
APOBP04114 AC091179.1-201ENST00000461606 579 ntBASIC1.6□□□□□ -2.15
APOBP04114 AC016687.1-201ENST00000482574 353 ntBASIC1.6□□□□□ -2.15
APOBP04114 RN7SL636P-201ENST00000497504 294 ntBASIC1.6□□□□□ -2.15
APOBP04114 RANP3-201ENST00000530970 276 ntBASIC1.6□□□□□ -2.15
APOBP04114 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC1.6□□□□□ -2.15
APOBP04114 MIR6845-201ENST00000613182 61 ntBASIC1.6□□□□□ -2.15
APOBP04114 AL136981.2-201ENST00000617319 734 ntBASIC1.6□□□□□ -2.15
APOBP04114 AC006111.3-201ENST00000622137 383 ntBASIC1.6□□□□□ -2.15
APOBP04114 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
APOBP04114 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
APOBP04114 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC1.6□□□□□ -2.15
APOBP04114 AC104454.1-201ENST00000421341 1401 ntBASIC1.6□□□□□ -2.15
APOBP04114 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
APOBP04114 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC1.6□□□□□ -2.15
APOBP04114 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC1.6□□□□□ -2.15
APOBP04114 AC092013.1-201ENST00000438795 332 ntBASIC1.6□□□□□ -2.15
APOBP04114 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC1.6□□□□□ -2.15
APOBP04114 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC1.6□□□□□ -2.15
APOBP04114 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.6□□□□□ -2.15
APOBP04114 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
APOBP04114 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
APOBP04114 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
APOBP04114 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC1.6□□□□□ -2.15
APOBP04114 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC1.59□□□□□ -2.15
APOBP04114 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC1.59□□□□□ -2.15
APOBP04114 Y_RNA.355-201ENST00000365462 98 ntBASIC1.59□□□□□ -2.15
APOBP04114 RPL31P12-201ENST00000422587 358 ntBASIC1.59□□□□□ -2.15
APOBP04114 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC1.59□□□□□ -2.15
APOBP04114 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC1.59□□□□□ -2.15
APOBP04114 AC022069.1-201ENST00000582910 658 ntBASIC1.59□□□□□ -2.15
APOBP04114 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.59□□□□□ -2.15
APOBP04114 MIR8070-201ENST00000616510 88 ntBASIC1.59□□□□□ -2.15
APOBP04114 AL122125.1-201ENST00000616999 600 ntBASIC1.59□□□□□ -2.15
APOBP04114 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.59□□□□□ -2.15
APOBP04114 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC1.59□□□□□ -2.15
APOBP04114 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
APOBP04114 AC093831.2-201ENST00000624393 3427 ntBASIC1.59□□□□□ -2.15
APOBP04114 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC1.59□□□□□ -2.15
APOBP04114 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC1.59□□□□□ -2.15
APOBP04114 AC138915.3-201ENST00000562908 1389 ntBASIC1.59□□□□□ -2.15
APOBP04114 MTND5P6-201ENST00000422338 1798 ntBASIC1.59□□□□□ -2.15
APOBP04114 ZNF603P-201ENST00000405613 487 ntBASIC1.59□□□□□ -2.15
APOBP04114 AC133473.1-201ENST00000455173 299 ntBASIC1.59□□□□□ -2.15
APOBP04114 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC1.59□□□□□ -2.15
APOBP04114 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC1.59□□□□□ -2.15
APOBP04114 AC004801.2-202ENST00000463559 283 ntBASIC1.59□□□□□ -2.15
APOBP04114 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.59□□□□□ -2.15
APOBP04114 AC090695.1-201ENST00000561269 1222 ntBASIC1.59□□□□□ -2.15
APOBP04114 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC1.59□□□□□ -2.15
APOBP04114 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
APOBP04114 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC1.59□□□□□ -2.15
APOBP04114 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC1.59□□□□□ -2.15
APOBP04114 Y_RNA.338-201ENST00000365320 114 ntBASIC1.59□□□□□ -2.16
APOBP04114 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC1.59□□□□□ -2.16
APOBP04114 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC1.59□□□□□ -2.16
APOBP04114 AL590004.2-201ENST00000404787 371 ntBASIC1.59□□□□□ -2.16
APOBP04114 NANOGP5-201ENST00000424456 877 ntBASIC1.59□□□□□ -2.16
APOBP04114 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC1.59□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 121.1 ms