Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 BNIP3P7-201ENST00000605641 516 ntBASIC3.19□□□□□ -1.9
SHOX2O60902 AC011978.2-201ENST00000569835 2054 ntBASIC3.19□□□□□ -1.9
SHOX2O60902 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
SHOX2O60902 AC093908.1-201ENST00000623125 8092 ntBASIC3.18□□□□□ -1.9
SHOX2O60902 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHOX2O60902 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SHOX2O60902 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.18□□□□□ -1.9
SHOX2O60902 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHOX2O60902 RNU2-6P-201ENST00000411404 190 ntBASIC3.18□□□□□ -1.9
SHOX2O60902 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.18□□□□□ -1.9
SHOX2O60902 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC3.18□□□□□ -1.9
SHOX2O60902 AL035423.1-201ENST00000420331 213 ntBASIC3.18□□□□□ -1.9
SHOX2O60902 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.18□□□□□ -1.9
SHOX2O60902 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC3.18□□□□□ -1.9
SHOX2O60902 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.18□□□□□ -1.9
SHOX2O60902 RPL23AP11-201ENST00000475260 469 ntBASIC3.18□□□□□ -1.9
SHOX2O60902 SETP6-201ENST00000479329 568 ntBASIC3.18□□□□□ -1.9
SHOX2O60902 AC006483.1-201ENST00000487308 313 ntBASIC3.18□□□□□ -1.9
SHOX2O60902 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.18□□□□□ -1.9
SHOX2O60902 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.18□□□□□ -1.9
SHOX2O60902 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.18□□□□□ -1.9
SHOX2O60902 AC104986.1-201ENST00000517978 436 ntBASIC3.18□□□□□ -1.9
SHOX2O60902 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.18□□□□□ -1.9
SHOX2O60902 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC3.18□□□□□ -1.9
SHOX2O60902 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.18□□□□□ -1.9
SHOX2O60902 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.18□□□□□ -1.9
SHOX2O60902 GTF2IP8-201ENST00000560687 584 ntBASIC3.18□□□□□ -1.9
SHOX2O60902 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHOX2O60902 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.18□□□□□ -1.9
SHOX2O60902 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.18□□□□□ -1.9
SHOX2O60902 HSPA8P19-201ENST00000505359 1517 ntBASIC3.18□□□□□ -1.9
SHOX2O60902 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
SHOX2O60902 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHOX2O60902 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
SHOX2O60902 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.18□□□□□ -1.9
SHOX2O60902 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SHOX2O60902 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.17□□□□□ -1.9
SHOX2O60902 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SHOX2O60902 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHOX2O60902 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SHOX2O60902 ESD-201ENST00000378697 1079 ntTSL 5 BASIC3.17□□□□□ -1.9
SHOX2O60902 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC3.17□□□□□ -1.9
SHOX2O60902 EIF5P1-201ENST00000400019 1231 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 MIR1289-1-201ENST00000408836 144 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 ATP5A1P2-201ENST00000412323 255 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 OR1AA1P-201ENST00000419597 916 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 AC241520.1-201ENST00000422654 1099 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SHOX2O60902 AL445528.1-201ENST00000426330 420 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.17□□□□□ -1.9
SHOX2O60902 AL445584.1-201ENST00000431451 330 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 MTCO1P57-201ENST00000432182 261 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.17□□□□□ -1.9
SHOX2O60902 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.17□□□□□ -1.9
SHOX2O60902 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.17□□□□□ -1.9
SHOX2O60902 RPL23AP33-201ENST00000442301 452 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 RPS15AP29-201ENST00000445539 400 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.17□□□□□ -1.9
SHOX2O60902 PDSS1P2-201ENST00000449397 678 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 AL049873.1-201ENST00000480540 376 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 RPL31P13-201ENST00000484151 370 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 HMGN1P11-201ENST00000508668 303 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 SNORA31.26-201ENST00000517250 137 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC3.17□□□□□ -1.9
SHOX2O60902 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.17□□□□□ -1.9
SHOX2O60902 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
SHOX2O60902 AC006116.10-201ENST00000591836 581 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 AC073111.2-201ENST00000605657 1075 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.17□□□□□ -1.9
SHOX2O60902 AC090425.2-201ENST00000608818 501 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 AC131902.3-201ENST00000611767 581 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 AC015967.1-201ENST00000619893 476 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC3.17□□□□□ -1.9
SHOX2O60902 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
SHOX2O60902 AL392088.2-201ENST00000637607 285 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHOX2O60902 MTCO1P8-201ENST00000416914 1523 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
SHOX2O60902 MTCO1P24-201ENST00000515438 1558 ntBASIC3.17□□□□□ -1.9
SHOX2O60902 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
SHOX2O60902 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
SHOX2O60902 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHOX2O60902 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHOX2O60902 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHOX2O60902 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SHOX2O60902 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
SHOX2O60902 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.16□□□□□ -1.9
SHOX2O60902 MTND4P13-201ENST00000402078 1023 ntBASIC3.16□□□□□ -1.9
SHOX2O60902 DHFRP5-201ENST00000406944 564 ntBASIC3.16□□□□□ -1.9
SHOX2O60902 EI24P1-201ENST00000416584 867 ntBASIC3.16□□□□□ -1.9
SHOX2O60902 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.16□□□□□ -1.9
SHOX2O60902 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.16□□□□□ -1.9
SHOX2O60902 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.16□□□□□ -1.9
SHOX2O60902 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.16□□□□□ -1.9
SHOX2O60902 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.16□□□□□ -1.9
SHOX2O60902 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.16□□□□□ -1.9
SHOX2O60902 AC007688.1-201ENST00000475592 759 ntBASIC3.16□□□□□ -1.9
SHOX2O60902 AC090543.1-201ENST00000492168 485 ntBASIC3.16□□□□□ -1.9
SHOX2O60902 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.16□□□□□ -1.9
SHOX2O60902 DYNLL1P6-201ENST00000503440 264 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms