Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ADAM5-202ENST00000399789 1942 ntBASIC5.07□□□□□ -1.6
TRIM39Q9HCM9 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
TRIM39Q9HCM9 MAPK10-286ENST00000641208 8747 ntBASIC5.07□□□□□ -1.6
TRIM39Q9HCM9 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
TRIM39Q9HCM9 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 SNORD51-201ENST00000384320 80 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 Y_RNA.481-201ENST00000384373 102 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 U3.29-201ENST00000391296 212 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AL645927.1-201ENST00000396783 406 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 GLULP6-201ENST00000399502 913 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC019097.1-201ENST00000424783 735 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 BRWD1P3-201ENST00000428816 390 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 MTCO2P11-201ENST00000431069 680 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 NEK4P1-201ENST00000433383 879 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 LYPLA1P1-201ENST00000434514 622 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 MTCO3P18-201ENST00000440206 761 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 RPS4XP4-201ENST00000443195 763 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC012512.1-201ENST00000446594 718 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 VN1R34P-201ENST00000447387 883 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 IFNWP4-201ENST00000453148 294 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 RN7SL244P-201ENST00000493405 297 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 RPS4XP18-201ENST00000495480 763 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC004980.4-201ENST00000513375 203 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AP003497.1-201ENST00000528472 562 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC109635.3-201ENST00000529536 185 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AL161713.1-201ENST00000555538 145 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC051619.2-201ENST00000559063 397 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 MTCYBP13-201ENST00000578634 1093 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AL451044.1-201ENST00000604867 238 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AL357078.3-201ENST00000607528 618 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AL355472.4-201ENST00000610233 626 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC068870.2-201ENST00000620635 389 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AP006248.2-201ENST00000623309 592 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 AC091953.2-201ENST00000623979 160 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 MAPK10-304ENST00000641341 3984 ntBASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.06□□□□□ -1.6
TRIM39Q9HCM9 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RNU5E-1-201ENST00000362477 120 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RNU6-181P-201ENST00000363225 107 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 SNORA20.2-201ENST00000383922 131 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 FGFR1OP2P1-201ENST00000395943 500 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RNU6ATAC7P-201ENST00000408111 127 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RPS27AP12-201ENST00000429552 465 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 PTMAP3-201ENST00000447474 330 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 IGHV5-78-201ENST00000450948 295 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AC104308.1-201ENST00000454621 333 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RPL37P6-202ENST00000464216 403 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 RN7SL808P-201ENST00000496066 299 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 AL139099.1-201ENST00000497398 403 ntBASIC5.05□□□□□ -1.6
TRIM39Q9HCM9 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms