Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC105185.1-201ENST00000518705 535 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC020914.4-201ENST00000597690 277 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC025946.2-201ENST00000603398 234 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 OR2AS2P-201ENST00000606902 342 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 MIR6867-201ENST00000610636 67 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC079248.2-201ENST00000623779 326 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC112484.5-201ENST00000624189 228 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC107982.1-201ENST00000507171 1300 ntBASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PCDH9Q9HC56 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
PCDH9Q9HC56 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
PCDH9Q9HC56 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
PCDH9Q9HC56 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC4.09□□□□□ -1.76
PCDH9Q9HC56 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 RNU6-115P-201ENST00000364310 107 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 RNA5SP317-201ENST00000410176 116 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 RNA5SP311-201ENST00000411290 116 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 RPL7AP73-201ENST00000413490 353 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 RPP40P1-201ENST00000426762 456 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 RPS25P9-201ENST00000435591 252 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 SNRPGP5-201ENST00000456003 220 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 SYPL1P1-201ENST00000473622 768 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 MTND3P7-201ENST00000474435 343 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC092045.1-201ENST00000495716 1231 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 FTH1P9-201ENST00000513251 355 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 RNA5SP315-201ENST00000516340 116 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 RNA5SP312-201ENST00000517068 116 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AL161713.1-201ENST00000555538 145 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 TRAV15-201ENST00000556680 249 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC135628.1-201ENST00000568867 534 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC090616.2-202ENST00000584248 222 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC040904.1-201ENST00000590850 223 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 VN1R79P-201ENST00000593540 513 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC110760.3-201ENST00000598794 467 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC124312.4-201ENST00000605533 310 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 MIR6868-201ENST00000611215 58 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AC122133.1-201ENST00000613964 233 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 uc_338.32-201ENST00000615087 172 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 MKKS-204ENST00000639674 192 ntBASIC4.08□□□□□ -1.76
PCDH9Q9HC56 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
PCDH9Q9HC56 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 AC087359.1-201ENST00000508335 1740 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 RAC1P3-201ENST00000416129 580 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 IFNNP1-201ENST00000429219 553 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 RPL31P54-201ENST00000429803 370 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 MTCYBP3-201ENST00000445588 1137 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 RPS17P13-201ENST00000448974 407 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 ACTG1P13-201ENST00000486987 1043 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 OR4G11P-201ENST00000492842 939 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 AC147055.4-201ENST00000504399 745 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 AC020593.1-201ENST00000507399 299 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 AC111000.2-201ENST00000507775 550 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 HSPE1P23-201ENST00000509838 286 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 AC093281.2-201ENST00000510153 597 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 MTCO1P30-201ENST00000515244 580 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 MTCO1P35-201ENST00000515270 228 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 RNU6-488P-201ENST00000515918 99 ntBASIC4.07□□□□□ -1.76
PCDH9Q9HC56 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.07□□□□□ -1.76
PCDH9Q9HC56 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms