Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
NKX3-1Q99801 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
NKX3-1Q99801 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
NKX3-1Q99801 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.53□□□□□ -1.84
NKX3-1Q99801 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
NKX3-1Q99801 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 AL122126.1-201ENST00000546905 1318 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
NKX3-1Q99801 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 NOL8P1-201ENST00000508336 3529 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
NKX3-1Q99801 RN7SKP227-201ENST00000364445 330 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 SNORA51.6-201ENST00000384151 125 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 MIR506-201ENST00000384998 124 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 EIF5P1-201ENST00000400019 1231 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AL049545.1-201ENST00000401856 572 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AL023807.1-201ENST00000407932 359 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 MIR1284-201ENST00000408337 120 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 PIGPP2-201ENST00000411569 458 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 RPL23AP38-201ENST00000423801 469 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AL354941.1-201ENST00000438600 464 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC092427.1-201ENST00000439177 601 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 MTND2P20-201ENST00000440805 661 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC006011.1-201ENST00000442758 349 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AL512326.1-201ENST00000443050 721 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 RNU7-125P-201ENST00000458760 62 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 NCOR1P1-202ENST00000486162 291 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 RNU6-583P-201ENST00000516012 92 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 RNU7-143P-201ENST00000516781 65 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 VBP1-203ENST00000535916 944 ntTSL 2 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC007834.2-201ENST00000536310 343 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 OSBPL9P5-201ENST00000542581 171 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC135001.1-201ENST00000544546 283 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC092470.1-201ENST00000546187 132 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 LSM6P2-201ENST00000552208 177 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC008015.1-201ENST00000555505 465 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 AL133457.1-201ENST00000564251 987 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC009712.1-201ENST00000564938 316 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 AL020997.2-201ENST00000602607 184 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC114878.2-201ENST00000604863 1251 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AL590392.1-201ENST00000604960 446 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 HMGB1P50-201ENST00000605814 607 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AP003117.2-201ENST00000606010 545 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC092653.1-201ENST00000608509 531 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC245297.2-201ENST00000610119 565 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 AC130650.2-201ENST00000618736 2403 ntBASIC3.53□□□□□ -1.84
NKX3-1Q99801 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.53□□□□□ -1.84
NKX3-1Q99801 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.53□□□□□ -1.85
NKX3-1Q99801 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.53□□□□□ -1.85
NKX3-1Q99801 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-1Q99801 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-1Q99801 AC068538.1-201ENST00000376856 336 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 AL590084.2-201ENST00000401481 382 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 SSXP10-201ENST00000402595 565 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-1Q99801 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 USP9YP26-201ENST00000421008 661 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 COX6CP15-201ENST00000426313 211 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 AC011742.1-201ENST00000431448 434 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 YWHAZP7-201ENST00000436906 631 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 RPL39P6-201ENST00000448289 150 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 NUTF2P3-201ENST00000448540 384 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
NKX3-1Q99801 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 HIGD1AP3-201ENST00000515857 278 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 RN7SKP234-201ENST00000517173 224 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 IGKV2D-36-201ENST00000518643 226 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC3.52□□□□□ -1.85
NKX3-1Q99801 ZNF705CP-201ENST00000530515 889 ntBASIC3.52□□□□□ -1.85
NKX3-1Q99801 AC105233.3-201ENST00000531125 744 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms