Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 NPM1P10-201ENST00000398310 865 ntBASIC2.53□□□□□ -2
VPS13AQ96RL7 AL121882.1-201ENST00000422893 417 ntBASIC2.53□□□□□ -2
VPS13AQ96RL7 AC055855.1-201ENST00000489563 579 ntBASIC2.53□□□□□ -2
VPS13AQ96RL7 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC2.53□□□□□ -2
VPS13AQ96RL7 AL109741.3-201ENST00000561748 592 ntBASIC2.53□□□□□ -2
VPS13AQ96RL7 AC068313.1-201ENST00000604028 1008 ntBASIC2.53□□□□□ -2
VPS13AQ96RL7 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.53□□□□□ -2
VPS13AQ96RL7 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC2.53□□□□□ -2
VPS13AQ96RL7 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
VPS13AQ96RL7 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.53□□□□□ -2
VPS13AQ96RL7 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.53□□□□□ -2
VPS13AQ96RL7 U3.11-201ENST00000364476 212 ntBASIC2.53□□□□□ -2.01
VPS13AQ96RL7 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC2.53□□□□□ -2.01
VPS13AQ96RL7 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
VPS13AQ96RL7 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.53□□□□□ -2.01
VPS13AQ96RL7 PRELID3BP7-201ENST00000503606 469 ntBASIC2.53□□□□□ -2.01
VPS13AQ96RL7 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC2.53□□□□□ -2.01
VPS13AQ96RL7 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 FAR1P1-201ENST00000427163 934 ntBASIC2.52□□□□□ -2.01
VPS13AQ96RL7 AC112673.1-201ENST00000513168 575 ntBASIC2.52□□□□□ -2.01
VPS13AQ96RL7 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 SNORA35B-201ENST00000607417 129 ntBASIC2.52□□□□□ -2.01
VPS13AQ96RL7 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 STK31-205ENST00000433467 3085 ntTSL 2 BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 AC108471.1-201ENST00000513977 287 ntBASIC2.52□□□□□ -2.01
VPS13AQ96RL7 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
VPS13AQ96RL7 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 Y_RNA.116-201ENST00000363292 103 ntBASIC2.51□□□□□ -2.01
VPS13AQ96RL7 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.51□□□□□ -2.01
VPS13AQ96RL7 AP003117.2-201ENST00000606010 545 ntBASIC2.51□□□□□ -2.01
VPS13AQ96RL7 AL355493.4-201ENST00000618530 292 ntBASIC2.51□□□□□ -2.01
VPS13AQ96RL7 RMST_9.1-201ENST00000619945 193 ntBASIC2.51□□□□□ -2.01
VPS13AQ96RL7 USP44-208ENST00000552440 1818 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 AL353729.1-201ENST00000425044 720 ntBASIC2.51□□□□□ -2.01
VPS13AQ96RL7 TRAV11-201ENST00000539512 339 ntBASIC2.51□□□□□ -2.01
VPS13AQ96RL7 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 AC091564.4-201ENST00000533934 2194 ntBASIC2.51□□□□□ -2.01
VPS13AQ96RL7 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 OR10AB1P-202ENST00000641219 1686 ntBASIC2.51□□□□□ -2.01
VPS13AQ96RL7 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 U3.6-201ENST00000363622 211 ntBASIC2.51□□□□□ -2.01
VPS13AQ96RL7 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 AC007677.1-201ENST00000445757 515 ntBASIC2.51□□□□□ -2.01
VPS13AQ96RL7 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.51□□□□□ -2.01
VPS13AQ96RL7 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
VPS13AQ96RL7 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 MIR518E-201ENST00000385252 88 ntBASIC2.5□□□□□ -2.01
VPS13AQ96RL7 AL024474.1-201ENST00000404655 591 ntBASIC2.5□□□□□ -2.01
VPS13AQ96RL7 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 AC109315.1-201ENST00000584143 1347 ntBASIC2.5□□□□□ -2.01
VPS13AQ96RL7 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 SNORA25.9-201ENST00000365087 128 ntBASIC2.5□□□□□ -2.01
VPS13AQ96RL7 OR2AS1P-201ENST00000427827 319 ntBASIC2.5□□□□□ -2.01
VPS13AQ96RL7 RN7SKP24-201ENST00000515888 284 ntBASIC2.5□□□□□ -2.01
VPS13AQ96RL7 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 AC018630.1-201ENST00000541376 925 ntBASIC2.5□□□□□ -2.01
VPS13AQ96RL7 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
VPS13AQ96RL7 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC2.49□□□□□ -2.01
VPS13AQ96RL7 AC069218.2-201ENST00000411665 344 ntBASIC2.49□□□□□ -2.01
VPS13AQ96RL7 RPL30P2-201ENST00000414021 291 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms