Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC4.32□□□□□ -1.72
CUX1P39880 RNU1-87P-201ENST00000363727 170 ntBASIC4.32□□□□□ -1.72
CUX1P39880 MIR1289-2-201ENST00000408360 111 ntBASIC4.32□□□□□ -1.72
CUX1P39880 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC4.32□□□□□ -1.72
CUX1P39880 AC016687.1-201ENST00000482574 353 ntBASIC4.32□□□□□ -1.72
CUX1P39880 DYNLL1P6-201ENST00000503440 264 ntBASIC4.32□□□□□ -1.72
CUX1P39880 PRELID3BP7-201ENST00000503606 469 ntBASIC4.32□□□□□ -1.72
CUX1P39880 AC005921.1-201ENST00000510589 286 ntBASIC4.32□□□□□ -1.72
CUX1P39880 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
CUX1P39880 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.32□□□□□ -1.72
CUX1P39880 AC025811.1-201ENST00000604312 472 ntBASIC4.32□□□□□ -1.72
CUX1P39880 AL392112.1-201ENST00000605115 829 ntBASIC4.32□□□□□ -1.72
CUX1P39880 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.32□□□□□ -1.72
CUX1P39880 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC4.32□□□□□ -1.72
CUX1P39880 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CUX1P39880 OR11H5P-202ENST00000641612 1325 ntBASIC4.32□□□□□ -1.72
CUX1P39880 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CUX1P39880 AC092079.1-201ENST00000558620 1985 ntBASIC4.32□□□□□ -1.72
CUX1P39880 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CUX1P39880 FAM133CP-201ENST00000332869 704 ntBASIC4.31□□□□□ -1.72
CUX1P39880 AL079342.1-201ENST00000401460 267 ntBASIC4.31□□□□□ -1.72
CUX1P39880 RPL23AP48-201ENST00000406913 488 ntBASIC4.31□□□□□ -1.72
CUX1P39880 AL590103.1-201ENST00000434488 307 ntBASIC4.31□□□□□ -1.72
CUX1P39880 IFNA11P-201ENST00000446352 526 ntBASIC4.31□□□□□ -1.72
CUX1P39880 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.31□□□□□ -1.72
CUX1P39880 AC234781.5-201ENST00000508429 271 ntBASIC4.31□□□□□ -1.72
CUX1P39880 AC008837.1-201ENST00000511513 412 ntBASIC4.31□□□□□ -1.72
CUX1P39880 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.31□□□□□ -1.72
CUX1P39880 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.31□□□□□ -1.72
CUX1P39880 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC4.31□□□□□ -1.72
CUX1P39880 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.31□□□□□ -1.72
CUX1P39880 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC4.31□□□□□ -1.72
CUX1P39880 CR381653.2-201ENST00000624041 768 ntBASIC4.31□□□□□ -1.72
CUX1P39880 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CUX1P39880 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC4.31□□□□□ -1.72
CUX1P39880 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.31□□□□□ -1.72
CUX1P39880 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CUX1P39880 RNA5SP502-201ENST00000362694 119 ntBASIC4.31□□□□□ -1.72
CUX1P39880 RNA5SP425-201ENST00000410336 112 ntBASIC4.31□□□□□ -1.72
CUX1P39880 AL591623.2-201ENST00000449978 222 ntBASIC4.31□□□□□ -1.72
CUX1P39880 KLHL2P1-201ENST00000508691 521 ntBASIC4.31□□□□□ -1.72
CUX1P39880 TXNP6-201ENST00000510190 310 ntBASIC4.31□□□□□ -1.72
CUX1P39880 AC122134.1-201ENST00000565664 1104 ntBASIC4.31□□□□□ -1.72
CUX1P39880 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.31□□□□□ -1.72
CUX1P39880 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC4.31□□□□□ -1.72
CUX1P39880 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CUX1P39880 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CUX1P39880 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CUX1P39880 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CUX1P39880 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.3□□□□□ -1.72
CUX1P39880 OR52B1P-201ENST00000316506 909 ntBASIC4.3□□□□□ -1.72
CUX1P39880 ATP5F1P6-201ENST00000402768 767 ntBASIC4.3□□□□□ -1.72
CUX1P39880 AC004987.3-201ENST00000413879 771 ntBASIC4.3□□□□□ -1.72
CUX1P39880 NANOGP5-201ENST00000424456 877 ntBASIC4.3□□□□□ -1.72
CUX1P39880 RPS4XP6-201ENST00000477670 797 ntBASIC4.3□□□□□ -1.72
CUX1P39880 AC068657.1-201ENST00000520807 306 ntBASIC4.3□□□□□ -1.72
CUX1P39880 AC128657.1-201ENST00000549459 145 ntBASIC4.3□□□□□ -1.72
CUX1P39880 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC4.3□□□□□ -1.72
CUX1P39880 CASC16-202ENST00000563844 610 ntTSL 3 BASIC4.3□□□□□ -1.72
CUX1P39880 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.3□□□□□ -1.72
CUX1P39880 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CUX1P39880 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CUX1P39880 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CUX1P39880 OR4G1P-202ENST00000641173 1788 ntBASIC4.29□□□□□ -1.72
CUX1P39880 AL359511.1-201ENST00000402970 211 ntBASIC4.29□□□□□ -1.72
CUX1P39880 BTF3P7-201ENST00000407097 488 ntBASIC4.29□□□□□ -1.72
CUX1P39880 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.29□□□□□ -1.72
CUX1P39880 ISCA1P6-201ENST00000427740 390 ntBASIC4.29□□□□□ -1.72
CUX1P39880 SNORA9.3-201ENST00000516383 129 ntBASIC4.29□□□□□ -1.72
CUX1P39880 AL355836.1-201ENST00000555951 870 ntBASIC4.29□□□□□ -1.72
CUX1P39880 MIR4648-201ENST00000580107 72 ntBASIC4.29□□□□□ -1.72
CUX1P39880 AC083760.1-201ENST00000589621 670 ntBASIC4.29□□□□□ -1.72
CUX1P39880 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC4.29□□□□□ -1.72
CUX1P39880 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
CUX1P39880 AC138915.3-201ENST00000562908 1389 ntBASIC4.29□□□□□ -1.72
CUX1P39880 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CUX1P39880 AC087565.3-202ENST00000642085 1603 ntBASIC4.28□□□□□ -1.72
CUX1P39880 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CUX1P39880 SNORA70E-201ENST00000384492 135 ntBASIC4.28□□□□□ -1.72
CUX1P39880 AC080125.1-201ENST00000414888 684 ntBASIC4.28□□□□□ -1.72
CUX1P39880 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CUX1P39880 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC4.28□□□□□ -1.72
CUX1P39880 AL133271.1-201ENST00000538229 291 ntBASIC4.28□□□□□ -1.72
CUX1P39880 AC009101.1-201ENST00000568135 242 ntBASIC4.28□□□□□ -1.72
CUX1P39880 AC078899.3-201ENST00000599065 212 ntBASIC4.28□□□□□ -1.72
CUX1P39880 SNORA35B-201ENST00000607417 129 ntBASIC4.28□□□□□ -1.72
CUX1P39880 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CUX1P39880 AC092881.1-201ENST00000638218 2733 ntBASIC4.28□□□□□ -1.72
CUX1P39880 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
CUX1P39880 SNORD114-30-201ENST00000364448 72 ntBASIC4.27□□□□□ -1.73
CUX1P39880 OR51A3P-201ENST00000413596 924 ntBASIC4.27□□□□□ -1.73
CUX1P39880 HMGN1P5-201ENST00000448591 263 ntBASIC4.27□□□□□ -1.73
CUX1P39880 HMGB1P25-201ENST00000468402 607 ntBASIC4.27□□□□□ -1.73
CUX1P39880 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.27□□□□□ -1.73
CUX1P39880 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC4.27□□□□□ -1.73
CUX1P39880 AC010928.3-201ENST00000587712 541 ntBASIC4.27□□□□□ -1.73
CUX1P39880 AC007423.1-201ENST00000605009 627 ntBASIC4.27□□□□□ -1.73
CUX1P39880 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
CUX1P39880 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
CUX1P39880 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms