Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
HOXD3P31249 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD3P31249 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD3P31249 RPS20P2-201ENST00000402520 389 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 RN7SKP16-201ENST00000410180 299 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 RNA5SP113-201ENST00000410486 84 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXD3P31249 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD3P31249 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD3P31249 C1DP2-201ENST00000418167 426 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD3P31249 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD3P31249 USP9YP36-201ENST00000424581 829 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 RPEP2-201ENST00000432149 701 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AL358934.1-201ENST00000432346 324 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD3P31249 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD3P31249 RPL7AP61-201ENST00000443410 636 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 RPS26P56-201ENST00000444468 240 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 Z99127.3-201ENST00000448158 395 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AP000542.1-201ENST00000448473 371 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXD3P31249 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD3P31249 SNRPFP4-201ENST00000456366 242 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC146507.1-201ENST00000468335 354 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 MTCO3P38-201ENST00000468910 766 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AL121769.1-201ENST00000469473 401 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 RPS3AP17-201ENST00000472594 777 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 MTND1P3-201ENST00000484956 952 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 RPL7P24-201ENST00000493052 752 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC3.78□□□□□ -1.8
HOXD3P31249 GAPDHP56-201ENST00000506031 988 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD3P31249 ARL2BPP6-201ENST00000512757 439 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXD3P31249 HSPA8P13-201ENST00000523715 472 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXD3P31249 AP003181.2-201ENST00000528941 181 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXD3P31249 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD3P31249 AP001880.2-201ENST00000538233 448 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD3P31249 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.78□□□□□ -1.8
HOXD3P31249 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD3P31249 AC006960.3-201ENST00000561845 705 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AL157394.1-201ENST00000562983 1224 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXD3P31249 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXD3P31249 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXD3P31249 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXD3P31249 AL512782.1-201ENST00000603093 364 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AL022154.1-201ENST00000604698 785 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC092954.2-201ENST00000609103 430 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC007014.2-201ENST00000615581 479 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 NAA60-237ENST00000615865 326 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXD3P31249 AC108479.2-201ENST00000617314 601 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
HOXD3P31249 CR381653.2-201ENST00000624041 768 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 AC124864.2-201ENST00000624736 186 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD3P31249 CCT4P2-201ENST00000233836 1548 ntBASIC3.78□□□□□ -1.8
HOXD3P31249 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
HOXD3P31249 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXD3P31249 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD3P31249 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXD3P31249 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
HOXD3P31249 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
HOXD3P31249 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXD3P31249 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD3P31249 BCLAF1P2-201ENST00000624956 2609 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD3P31249 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD3P31249 WAC-209ENST00000428935 1320 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXD3P31249 ELF2P3-201ENST00000445099 1506 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXD3P31249 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD3P31249 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
HOXD3P31249 U8.3-201ENST00000363321 132 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
HOXD3P31249 RNY3P14-201ENST00000384309 102 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 MTCO1P17-201ENST00000411522 491 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 TBCAP2-201ENST00000416175 326 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AL035410.1-201ENST00000427409 427 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.77□□□□□ -1.81
HOXD3P31249 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXD3P31249 RPS3AP54-201ENST00000435535 734 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXD3P31249 AC073614.1-201ENST00000438690 650 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXD3P31249 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 RPS17P2-201ENST00000461663 408 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXD3P31249 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXD3P31249 AC110792.2-201ENST00000510278 224 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.77□□□□□ -1.81
HOXD3P31249 RNU2-46P-201ENST00000517038 113 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 RNA5SP230-201ENST00000517039 122 ntBASIC3.77□□□□□ -1.81
HOXD3P31249 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.77□□□□□ -1.81
HOXD3P31249 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms