Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.47□□□□□ -2.01
HLA-DMBP28068 MIMT1-201ENST00000597105 1050 ntBASIC2.47□□□□□ -2.01
HLA-DMBP28068 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC2.47□□□□□ -2.01
HLA-DMBP28068 AL161756.2-201ENST00000604597 246 ntBASIC2.47□□□□□ -2.01
HLA-DMBP28068 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC2.47□□□□□ -2.01
HLA-DMBP28068 RDM1-219ENST00000615378 542 ntTSL 3 BASIC2.47□□□□□ -2.01
HLA-DMBP28068 SNORD39.4-201ENST00000620099 78 ntBASIC2.47□□□□□ -2.01
HLA-DMBP28068 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC2.47□□□□□ -2.01
HLA-DMBP28068 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.47□□□□□ -2.01
HLA-DMBP28068 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC2.47□□□□□ -2.01
HLA-DMBP28068 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.47□□□□□ -2.01
HLA-DMBP28068 XPOTP1-201ENST00000443317 2398 ntBASIC2.47□□□□□ -2.01
HLA-DMBP28068 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.47□□□□□ -2.01
HLA-DMBP28068 AL356274.2-201ENST00000624379 3752 ntBASIC2.47□□□□□ -2.01
HLA-DMBP28068 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC110774.1-201ENST00000623567 2018 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC008264.2-201ENST00000610193 3731 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 RNU6-819P-201ENST00000364116 107 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 SNORA51.2-201ENST00000364595 132 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 U3.19-201ENST00000390893 196 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 RPL5P18-201ENST00000406671 891 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 RNA5SP229-201ENST00000410809 99 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC063979.1-201ENST00000415539 377 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC012065.2-201ENST00000421295 375 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AL590103.1-201ENST00000434488 307 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 HMGN2P20-201ENST00000437531 273 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 HMGB1P48-201ENST00000446155 598 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 AL513343.1-201ENST00000451818 792 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 RPS4XP10-201ENST00000465034 731 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC026427.2-201ENST00000506228 536 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 RNA5SP217-201ENST00000515959 91 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 MAGOH2P-202ENST00000584384 429 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 MIR4276-201ENST00000584832 70 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AL031985.2-201ENST00000600955 480 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 AL133393.1-201ENST00000603277 287 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.46□□□□□ -2.02
HLA-DMBP28068 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 AC107081.3-201ENST00000612715 2034 ntBASIC2.46□□□□□ -2.02
HLA-DMBP28068 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.46□□□□□ -2.02
HLA-DMBP28068 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
HLA-DMBP28068 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
HLA-DMBP28068 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC2.45□□□□□ -2.02
HLA-DMBP28068 RNU6-600P-201ENST00000362524 99 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 RNU6-335P-201ENST00000364563 113 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 SNORA51.4-201ENST00000364993 124 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 OR6K3-202ENST00000368146 996 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 OR52E6-202ENST00000379946 954 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 MIR491-201ENST00000384877 84 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 SAR1AP2-201ENST00000392696 594 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 RPL23AP47-201ENST00000408017 460 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 BMS1P22-201ENST00000414726 313 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 OR51AB1P-201ENST00000429046 620 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 AC244505.4-201ENST00000434905 287 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 SETP8-201ENST00000435341 628 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 TRIM60P18-201ENST00000441518 828 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 SSXP5-201ENST00000443473 287 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 Z99127.3-201ENST00000448158 395 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 BX510359.1-201ENST00000456973 237 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 AC008155.2-201ENST00000464337 397 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 RPL21P8-201ENST00000465083 535 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 RPS27AP1-201ENST00000475545 471 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 AC126121.1-201ENST00000482313 553 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 HMGB1P38-201ENST00000490557 577 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 RPL23AP55-201ENST00000498163 452 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 HMGB1P3-201ENST00000502802 616 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 AC111193.1-201ENST00000504097 155 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC2.45□□□□□ -2.02
HLA-DMBP28068 RN7SKP282-201ENST00000516824 299 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC2.45□□□□□ -2.02
HLA-DMBP28068 MTCYBP41-201ENST00000528913 1123 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 AC004923.2-201ENST00000529649 369 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC2.45□□□□□ -2.02
HLA-DMBP28068 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC2.45□□□□□ -2.02
HLA-DMBP28068 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.45□□□□□ -2.02
HLA-DMBP28068 AC009268.1-201ENST00000561352 1203 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 AC090751.1-201ENST00000566966 267 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 MIR5195-201ENST00000583555 115 ntBASIC2.45□□□□□ -2.02
HLA-DMBP28068 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC2.45□□□□□ -2.02
HLA-DMBP28068 AC110792.4-201ENST00000609843 298 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms