Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AL353898.1-201ENST00000444055 238 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 AL157827.1-201ENST00000447622 132 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 AL627224.1-201ENST00000448334 444 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 TPMTP4-201ENST00000450749 678 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 AC090543.1-201ENST00000492168 485 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 AC078817.1-201ENST00000492623 435 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CTDNEP1O95476 RNU2-58P-201ENST00000516403 183 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 RN7SKP82-201ENST00000516786 223 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 RN7SKP57-201ENST00000517248 293 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.37□□□□□ -1.87
CTDNEP1O95476 AL389895.1-201ENST00000554127 252 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.37□□□□□ -1.87
CTDNEP1O95476 AC055876.1-202ENST00000567053 138 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC3.37□□□□□ -1.87
CTDNEP1O95476 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC3.37□□□□□ -1.87
CTDNEP1O95476 CR589904.2-201ENST00000612533 440 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 AC091953.5-201ENST00000622919 233 ntBASIC3.37□□□□□ -1.87
CTDNEP1O95476 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.37□□□□□ -1.87
CTDNEP1O95476 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.37□□□□□ -1.87
CTDNEP1O95476 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CTDNEP1O95476 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
CTDNEP1O95476 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
CTDNEP1O95476 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CTDNEP1O95476 MIR422A-201ENST00000362286 90 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 MTCO3P31-201ENST00000405526 789 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 AC244505.4-201ENST00000434905 287 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 CBX1P4-201ENST00000439415 457 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 SSXP5-201ENST00000443473 287 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 AC112653.1-201ENST00000443851 386 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 AC108157.1-201ENST00000510511 539 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 HMGB1P47-201ENST00000511281 589 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 AC093770.1-201ENST00000511559 571 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 HIGD1AP18-201ENST00000520730 278 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 ZNF192P1-203ENST00000565888 810 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 AC055764.2-201ENST00000610089 670 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
CTDNEP1O95476 AC011472.4-201ENST00000615848 491 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 AC009039.2-201ENST00000624524 529 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 CR392039.4-201ENST00000624968 501 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CTDNEP1O95476 MIR4278-201ENST00000636094 69 ntBASIC3.36□□□□□ -1.87
CTDNEP1O95476 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.36□□□□□ -1.87
CTDNEP1O95476 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CTDNEP1O95476 SNORD46.1-201ENST00000364139 104 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 RNU6-31P-201ENST00000384388 108 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 GSTA12P-201ENST00000402398 508 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AL590004.2-201ENST00000404787 371 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 Z86062.1-201ENST00000406773 777 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 AC007390.1-201ENST00000415722 356 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AC012498.1-201ENST00000424037 437 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AL451062.2-201ENST00000427515 271 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 MTND4LP14-201ENST00000429447 288 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 RPS24P8-201ENST00000431490 402 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AL590762.3-201ENST00000436372 640 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AL031663.1-201ENST00000437445 219 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 AP001992.1-205ENST00000462248 379 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 NFU1-207ENST00000462320 558 ntTSL 4 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 RPL5P23-201ENST00000496040 868 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 HMGB1P3-201ENST00000502802 616 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 DYNLL1P6-201ENST00000503440 264 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 MTCO1P31-201ENST00000506355 492 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AC108120.2-201ENST00000512973 294 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 RN7SKP272-201ENST00000516988 232 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 AP004242.1-201ENST00000533701 349 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 AC040174.2-201ENST00000602701 465 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AC012119.1-201ENST00000603184 222 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AP003117.2-201ENST00000606010 545 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AC090115.4-201ENST00000609970 188 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 AC020923.1-201ENST00000624021 917 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 ZNF542P-204ENST00000482727 1305 ntBASIC3.35□□□□□ -1.87
CTDNEP1O95476 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
CTDNEP1O95476 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CTDNEP1O95476 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms