Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
VPS9D1Q9Y2B5 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
VPS9D1Q9Y2B5 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
VPS9D1Q9Y2B5 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.69□□□□□ -1.34
VPS9D1Q9Y2B5 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
VPS9D1Q9Y2B5 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.69□□□□□ -1.34
VPS9D1Q9Y2B5 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
VPS9D1Q9Y2B5 AC074141.1-201ENST00000588129 2995 ntBASIC6.69□□□□□ -1.34
VPS9D1Q9Y2B5 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 FLRT3-201ENST00000341420 3971 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AC010328.1-201ENST00000596769 4060 ntTSL 2 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 RNU6-1284P-201ENST00000363701 100 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 RNU6-102P-201ENST00000384485 104 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AC006946.1-201ENST00000429106 328 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 RPL36P19-201ENST00000430744 301 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 BX679664.1-201ENST00000434429 253 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 RPL23AP28-201ENST00000448062 470 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AC097462.2-201ENST00000504623 481 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 IGLV3-6-201ENST00000523937 250 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 RN7SL426P-201ENST00000579106 295 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AC115085.1-201ENST00000588924 229 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AC006254.2-201ENST00000603259 279 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AL354718.1-201ENST00000619764 589 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AL161637.1-201ENST00000622380 412 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 ASB8-218ENST00000629941 278 ntTSL 5 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 DOCK11P1-201ENST00000553480 5932 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AC130650.2-201ENST00000618736 2403 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 HSP90AA4P-202ENST00000506915 2228 ntBASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
VPS9D1Q9Y2B5 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 AC122713.2-201ENST00000624942 3335 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 AC007342.5-201ENST00000571340 2142 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 RNU4-90P-201ENST00000362773 141 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 Y_RNA.127-201ENST00000363386 109 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 Y_RNA.215-201ENST00000364204 112 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 RNU6-898P-201ENST00000365627 104 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 RNU6-45P-201ENST00000384471 107 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 RNU6-257P-201ENST00000410238 98 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 RN7SKP159-201ENST00000410657 292 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 RNU2-61P-201ENST00000411069 191 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 EI24P4-201ENST00000423683 1078 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 AL590128.1-201ENST00000433407 286 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 GAPDHP20-201ENST00000444107 1007 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 PPIAP3-201ENST00000450588 505 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 RPL7AP71-201ENST00000451120 739 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 RPL37P6-202ENST00000464216 403 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 RPL10P7-201ENST00000495649 625 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 SNORA58-201ENST00000505219 137 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 AC006427.1-201ENST00000514359 712 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 AC140063.1-201ENST00000541343 259 ntBASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 ZNF121-202ENST00000586602 7177 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
VPS9D1Q9Y2B5 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
VPS9D1Q9Y2B5 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
VPS9D1Q9Y2B5 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
VPS9D1Q9Y2B5 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
VPS9D1Q9Y2B5 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
VPS9D1Q9Y2B5 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
VPS9D1Q9Y2B5 RNA5SP350-201ENST00000363298 111 ntBASIC6.66□□□□□ -1.34
VPS9D1Q9Y2B5 RNU6-933P-201ENST00000384424 107 ntBASIC6.66□□□□□ -1.34
VPS9D1Q9Y2B5 MIR187-201ENST00000385062 109 ntBASIC6.66□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms