Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 CASC19-284ENST00000642142 1868 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 ANKRD26P2-201ENST00000445530 1710 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 OR5BR1P-201ENST00000524992 1330 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 RNU6-666P-201ENST00000363499 107 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 RNU6-359P-201ENST00000365466 108 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 RNU6-533P-201ENST00000384144 107 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 RNU6-532P-201ENST00000384318 107 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 RPL23AP47-201ENST00000408017 460 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 RNU4-61P-201ENST00000411243 107 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 RNU6-373P-201ENST00000411247 98 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AC007394.1-201ENST00000421941 531 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 SKP1P3-201ENST00000429280 487 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 SUMO1P3-201ENST00000439961 304 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AL356981.1-201ENST00000454879 684 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 RN7SL174P-201ENST00000475578 289 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AC117394.1-201ENST00000477323 567 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 HMGB1P19-201ENST00000517578 577 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AL049779.2-201ENST00000553847 315 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 NRBF2P1-201ENST00000587407 859 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AC112187.2-201ENST00000604345 283 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 ACTR3BP1-201ENST00000605584 1247 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 AC109309.2-201ENST00000612597 332 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 SALL4P2-201ENST00000423288 2910 ntBASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
CCDC39Q9UFE4 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 MTND5P33-201ENST00000571250 1450 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 OR4A15-201ENST00000314706 1035 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 U3.3-201ENST00000362986 216 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 Y_RNA.259-201ENST00000364619 101 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 Y_RNA.387-201ENST00000383918 102 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AL356967.1-201ENST00000406305 431 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AC009161.1-201ENST00000417306 376 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 RAD23BP1-201ENST00000421404 1227 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 CBX3P6-201ENST00000430257 527 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AC009238.2-201ENST00000431026 355 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 BMS1P19-201ENST00000433925 393 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AL391987.1-201ENST00000441025 200 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 MTND1P9-201ENST00000453775 944 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 Z92846.1-201ENST00000456203 268 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 OR2AO1P-201ENST00000476497 403 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AF213884.1-201ENST00000488102 463 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AC112206.3-201ENST00000514578 389 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AL671862.1-201ENST00000515851 349 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 Y_RNA.720-201ENST00000517166 92 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AP003467.2-201ENST00000520175 319 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AP000790.1-201ENST00000528891 737 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AC055876.1-202ENST00000567053 138 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AC011445.2-201ENST00000599274 173 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 XIAPP1-201ENST00000603162 600 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AC138649.5-201ENST00000637456 137 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 LINC01355-201ENST00000566551 5444 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 CKAP2P1-201ENST00000555477 2049 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 AC097461.1-201ENST00000568928 2821 ntBASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC39Q9UFE4 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms