Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 HMGB1P1-201ENST00000522557 636 ntBASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 AL020997.3-201ENST00000602843 359 ntBASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 AC090116.1-201ENST00000615679 446 ntBASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 AC068722.2-201ENST00000618734 544 ntBASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 AL163152.1-201ENST00000642001 374 ntBASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.54□□□□□ -1.84
LRRC40Q9H9A6 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 MIR16-2-201ENST00000362117 81 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 DEFB109C-201ENST00000382575 264 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 DEFB109B-201ENST00000382656 264 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 MIR649-201ENST00000384843 97 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 RPL31P1-201ENST00000398116 372 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 RAD23BP2-201ENST00000416003 1207 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AP000907.1-201ENST00000428428 510 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 RRM2P4-201ENST00000441721 562 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 HMGB3P8-201ENST00000449709 577 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 RPL23AP67-201ENST00000465341 474 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AC010198.2-201ENST00000550612 259 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 BPTFP1-201ENST00000579209 492 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AC022146.1-201ENST00000595307 847 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AL355812.1-201ENST00000603215 216 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AL671309.1-201ENST00000603750 544 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AL121772.2-201ENST00000614331 297 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AC105227.2-201ENST00000615075 605 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AL357559.1-201ENST00000622228 274 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 AC004925.1-201ENST00000624256 2706 ntBASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LRRC40Q9H9A6 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
LRRC40Q9H9A6 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 AL513302.2-201ENST00000562313 1842 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 MIR30E-201ENST00000362104 92 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 RNU6-50P-201ENST00000362356 103 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 AL359837.1-201ENST00000381357 287 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 RNU6-761P-201ENST00000384148 107 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 RNU6-481P-201ENST00000384194 107 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 RNU6-921P-201ENST00000384361 107 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 AL445189.1-201ENST00000405722 338 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 RNU6ATAC-201ENST00000408749 126 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 AC009237.2-201ENST00000421358 284 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 RPS27AP1-201ENST00000475545 471 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 RPS4XP6-201ENST00000477670 797 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 AC004062.1-201ENST00000509926 645 ntBASIC3.52□□□□□ -1.85
LRRC40Q9H9A6 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms