Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AL163153.1-201ENST00000554223 283 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AC004817.2-201ENST00000561794 651 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AC114947.2-201ENST00000565748 2125 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.67□□□□□ -1.5
SOX4Q06945 CTHRC1P1-201ENST00000605383 469 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AC024940.4-201ENST00000605507 246 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.67□□□□□ -1.5
SOX4Q06945 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.67□□□□□ -1.5
SOX4Q06945 AC087588.2-201ENST00000617667 426 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 AL359757.2-201ENST00000624309 274 ntBASIC5.67□□□□□ -1.5
SOX4Q06945 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
SOX4Q06945 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.67□□□□□ -1.5
SOX4Q06945 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
SOX4Q06945 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC5.67□□□□□ -1.5
SOX4Q06945 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.66□□□□□ -1.5
SOX4Q06945 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
SOX4Q06945 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SOX4Q06945 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SOX4Q06945 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX4Q06945 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SOX4Q06945 DNM1P47-203ENST00000571780 12667 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.66□□□□□ -1.5
SOX4Q06945 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SOX4Q06945 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
SOX4Q06945 AC092681.1-201ENST00000297369 291 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.66□□□□□ -1.5
SOX4Q06945 MIR568-201ENST00000385036 95 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 EIF5P1-201ENST00000400019 1231 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SOX4Q06945 AL078604.1-201ENST00000404609 466 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
SOX4Q06945 RNU4-14P-201ENST00000410858 122 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 AC008280.1-201ENST00000418851 412 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 PMCHL1-202ENST00000423102 261 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 AC022022.1-201ENST00000430304 178 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX4Q06945 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX4Q06945 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.66□□□□□ -1.5
SOX4Q06945 AC073850.1-201ENST00000449243 255 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 RNU7-152P-201ENST00000458982 64 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 RPS4XP10-201ENST00000465034 731 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 GMFBP1-201ENST00000467831 427 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 MTND4LP22-201ENST00000508209 276 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX4Q06945 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX4Q06945 RNU4-29P-201ENST00000515943 174 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 RNU6-123P-201ENST00000516163 102 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 RNA5SP337-201ENST00000517007 109 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 AC136777.2-201ENST00000522979 358 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX4Q06945 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX4Q06945 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX4Q06945 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX4Q06945 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.66□□□□□ -1.5
SOX4Q06945 SNRPGP18-201ENST00000553000 214 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX4Q06945 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX4Q06945 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX4Q06945 VN1R84P-201ENST00000593697 235 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC5.66□□□□□ -1.5
SOX4Q06945 APOOP1-201ENST00000604695 592 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 AC133644.2-201ENST00000608142 540 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 AC004908.2-201ENST00000609090 574 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 AC130324.3-201ENST00000614165 542 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SOX4Q06945 uc_338.7-201ENST00000621834 124 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 AC022031.1-201ENST00000585985 2593 ntBASIC5.66□□□□□ -1.5
SOX4Q06945 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SOX4Q06945 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.66□□□□□ -1.5
SOX4Q06945 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
SOX4Q06945 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
SOX4Q06945 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
SOX4Q06945 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SOX4Q06945 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
SOX4Q06945 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SOX4Q06945 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SOX4Q06945 AP004289.2-201ENST00000444413 1457 ntBASIC5.65□□□□□ -1.5
SOX4Q06945 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.65□□□□□ -1.5
SOX4Q06945 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.5
SOX4Q06945 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC5.65□□□□□ -1.5
SOX4Q06945 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SOX4Q06945 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SOX4Q06945 AC067945.1-201ENST00000342609 618 ntBASIC5.65□□□□□ -1.5
SOX4Q06945 Y_RNA.301-201ENST00000364990 103 ntBASIC5.65□□□□□ -1.5
SOX4Q06945 MIR514A2-201ENST00000385131 88 ntBASIC5.65□□□□□ -1.5
SOX4Q06945 MIR514A3-201ENST00000385132 88 ntBASIC5.65□□□□□ -1.5
SOX4Q06945 RNU6-1106P-201ENST00000390845 107 ntBASIC5.65□□□□□ -1.5
SOX4Q06945 RNU6-308P-201ENST00000390957 107 ntBASIC5.65□□□□□ -1.5
SOX4Q06945 ARF4P3-201ENST00000397387 509 ntBASIC5.65□□□□□ -1.5
SOX4Q06945 AL359634.1-202ENST00000404721 284 ntBASIC5.65□□□□□ -1.5
SOX4Q06945 RNU6-193P-201ENST00000410977 107 ntBASIC5.65□□□□□ -1.5
SOX4Q06945 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms