Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 WASF1P1-201ENST00000447560 1131 ntBASIC4.39□□□□□ -1.71
CUX1P39880 AP000873.5-201ENST00000533906 236 ntBASIC4.39□□□□□ -1.71
CUX1P39880 AC022069.1-201ENST00000582910 658 ntBASIC4.39□□□□□ -1.71
CUX1P39880 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
CUX1P39880 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CUX1P39880 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
CUX1P39880 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CUX1P39880 BX276092.3-201ENST00000424182 230 ntBASIC4.38□□□□□ -1.71
CUX1P39880 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.38□□□□□ -1.71
CUX1P39880 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.38□□□□□ -1.71
CUX1P39880 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.38□□□□□ -1.71
CUX1P39880 AC245166.1-201ENST00000521012 253 ntBASIC4.38□□□□□ -1.71
CUX1P39880 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC4.38□□□□□ -1.71
CUX1P39880 OOSP1P2-201ENST00000579644 351 ntBASIC4.38□□□□□ -1.71
CUX1P39880 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.38□□□□□ -1.71
CUX1P39880 MIR7111-201ENST00000619751 72 ntBASIC4.38□□□□□ -1.71
CUX1P39880 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CUX1P39880 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CUX1P39880 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC4.38□□□□□ -1.71
CUX1P39880 AC010468.1-201ENST00000461022 817 ntBASIC4.37□□□□□ -1.71
CUX1P39880 AL391156.1-201ENST00000554965 554 ntBASIC4.37□□□□□ -1.71
CUX1P39880 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.37□□□□□ -1.71
CUX1P39880 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.37□□□□□ -1.71
CUX1P39880 AC010620.2-201ENST00000600135 313 ntBASIC4.37□□□□□ -1.71
CUX1P39880 AL158827.2-201ENST00000602494 330 ntBASIC4.37□□□□□ -1.71
CUX1P39880 AL008729.2-201ENST00000606393 473 ntBASIC4.37□□□□□ -1.71
CUX1P39880 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.37□□□□□ -1.71
CUX1P39880 AL691447.3-201ENST00000635020 330 ntBASIC4.37□□□□□ -1.71
CUX1P39880 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.37□□□□□ -1.71
CUX1P39880 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
CUX1P39880 AL353743.4-201ENST00000422653 1547 ntBASIC4.37□□□□□ -1.71
CUX1P39880 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
CUX1P39880 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CUX1P39880 RNU6ATAC37P-201ENST00000408328 131 ntBASIC4.36□□□□□ -1.71
CUX1P39880 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.36□□□□□ -1.71
CUX1P39880 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC4.36□□□□□ -1.71
CUX1P39880 RPLP0P7-201ENST00000416050 667 ntBASIC4.36□□□□□ -1.71
CUX1P39880 AL139415.2-201ENST00000431968 163 ntBASIC4.36□□□□□ -1.71
CUX1P39880 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
CUX1P39880 UBE2D3P1-201ENST00000436669 444 ntBASIC4.36□□□□□ -1.71
CUX1P39880 AC104058.1-201ENST00000448028 297 ntBASIC4.36□□□□□ -1.71
CUX1P39880 AP004217.1-201ENST00000480579 346 ntBASIC4.36□□□□□ -1.71
CUX1P39880 AC008277.2-201ENST00000605196 797 ntBASIC4.36□□□□□ -1.71
CUX1P39880 AC103810.6-201ENST00000606708 136 ntBASIC4.36□□□□□ -1.71
CUX1P39880 AL353684.1-201ENST00000622677 1120 ntBASIC4.36□□□□□ -1.71
CUX1P39880 AC016717.2-201ENST00000609089 5141 ntBASIC4.36□□□□□ -1.71
CUX1P39880 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CUX1P39880 Z98742.3-201ENST00000418637 326 ntBASIC4.36□□□□□ -1.71
CUX1P39880 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC4.36□□□□□ -1.71
CUX1P39880 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.36□□□□□ -1.71
CUX1P39880 AC125238.1-201ENST00000448842 249 ntBASIC4.36□□□□□ -1.71
CUX1P39880 AP002770.2-201ENST00000543613 532 ntBASIC4.36□□□□□ -1.71
CUX1P39880 AL442163.2-201ENST00000553912 710 ntBASIC4.36□□□□□ -1.71
CUX1P39880 AC009163.5-201ENST00000575421 637 ntBASIC4.36□□□□□ -1.71
CUX1P39880 AC090312.2-201ENST00000582687 378 ntBASIC4.36□□□□□ -1.71
CUX1P39880 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
CUX1P39880 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CUX1P39880 RNVU1-3-201ENST00000364313 161 ntBASIC4.35□□□□□ -1.71
CUX1P39880 MIR27B-201ENST00000385129 97 ntBASIC4.35□□□□□ -1.71
CUX1P39880 VDAC1P3-201ENST00000434069 851 ntBASIC4.35□□□□□ -1.71
CUX1P39880 OR6K1P-201ENST00000456766 971 ntBASIC4.35□□□□□ -1.71
CUX1P39880 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC4.35□□□□□ -1.71
CUX1P39880 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.34□□□□□ -1.71
CUX1P39880 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.34□□□□□ -1.71
CUX1P39880 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
CUX1P39880 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
CUX1P39880 RPL21P3-201ENST00000395517 478 ntBASIC4.34□□□□□ -1.71
CUX1P39880 RNU4-53P-201ENST00000410828 140 ntBASIC4.34□□□□□ -1.71
CUX1P39880 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.34□□□□□ -1.71
CUX1P39880 MTCO1P39-201ENST00000426148 480 ntBASIC4.34□□□□□ -1.71
CUX1P39880 AC005189.1-201ENST00000431286 310 ntBASIC4.34□□□□□ -1.71
CUX1P39880 AC146507.2-201ENST00000460608 476 ntBASIC4.34□□□□□ -1.71
CUX1P39880 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.34□□□□□ -1.71
CUX1P39880 AL020991.1-201ENST00000612314 373 ntBASIC4.34□□□□□ -1.71
CUX1P39880 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC4.34□□□□□ -1.71
CUX1P39880 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC4.34□□□□□ -1.71
CUX1P39880 MIR7153-201ENST00000637758 57 ntBASIC4.34□□□□□ -1.71
CUX1P39880 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CUX1P39880 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
CUX1P39880 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
CUX1P39880 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
CUX1P39880 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC4.33□□□□□ -1.72
CUX1P39880 RNU6-618P-201ENST00000363518 112 ntBASIC4.33□□□□□ -1.72
CUX1P39880 Y_RNA.238-201ENST00000364441 102 ntBASIC4.33□□□□□ -1.72
CUX1P39880 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
CUX1P39880 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC4.33□□□□□ -1.72
CUX1P39880 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.33□□□□□ -1.72
CUX1P39880 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.33□□□□□ -1.72
CUX1P39880 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.33□□□□□ -1.72
CUX1P39880 FAM172BP-201ENST00000487497 1089 ntBASIC4.33□□□□□ -1.72
CUX1P39880 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.33□□□□□ -1.72
CUX1P39880 AC008565.1-201ENST00000509046 885 ntBASIC4.33□□□□□ -1.72
CUX1P39880 RN7SKP24-201ENST00000515888 284 ntBASIC4.33□□□□□ -1.72
CUX1P39880 RN7SKP244-201ENST00000516513 307 ntBASIC4.33□□□□□ -1.72
CUX1P39880 AC100870.1-201ENST00000522035 505 ntBASIC4.33□□□□□ -1.72
CUX1P39880 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.33□□□□□ -1.72
CUX1P39880 MIR3605-201ENST00000583214 100 ntBASIC4.33□□□□□ -1.72
CUX1P39880 AC110741.2-201ENST00000605278 268 ntBASIC4.33□□□□□ -1.72
CUX1P39880 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CUX1P39880 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms