Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC5.32□□□□□ -1.56
HMGB1P09429 UBTFL6-201ENST00000477929 1024 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 AC090013.1-201ENST00000485147 480 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 AC008897.1-201ENST00000494006 347 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC5.32□□□□□ -1.56
HMGB1P09429 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.32□□□□□ -1.56
HMGB1P09429 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.32□□□□□ -1.56
HMGB1P09429 MTND2P32-201ENST00000521584 1038 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 COX6CP8-201ENST00000522620 226 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.32□□□□□ -1.56
HMGB1P09429 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGB1P09429 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGB1P09429 AGGF1P5-201ENST00000567900 919 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGB1P09429 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGB1P09429 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGB1P09429 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC5.32□□□□□ -1.56
HMGB1P09429 AC010201.1-201ENST00000605051 540 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 ACTR3BP1-201ENST00000605584 1247 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC5.32□□□□□ -1.56
HMGB1P09429 AL133243.1-201ENST00000614487 366 ntBASIC5.32□□□□□ -1.56
HMGB1P09429 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
HMGB1P09429 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
HMGB1P09429 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.31□□□□□ -1.56
HMGB1P09429 ZNF807-201ENST00000328088 1707 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
HMGB1P09429 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
HMGB1P09429 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HMGB1P09429 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
HMGB1P09429 OR4K15-201ENST00000305051 1216 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 RNU6-97P-201ENST00000363387 104 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 RNA5SP22-201ENST00000365393 109 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
HMGB1P09429 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
HMGB1P09429 SNORA74C-2-201ENST00000411179 201 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 RN7SKP53-201ENST00000411337 315 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 RPL21P108-201ENST00000413857 481 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC5.31□□□□□ -1.56
HMGB1P09429 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC5.31□□□□□ -1.56
HMGB1P09429 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC5.31□□□□□ -1.56
HMGB1P09429 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC5.31□□□□□ -1.56
HMGB1P09429 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.31□□□□□ -1.56
HMGB1P09429 AL772161.1-201ENST00000439130 476 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC5.31□□□□□ -1.56
HMGB1P09429 AL592447.1-201ENST00000447592 540 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 AC010655.1-201ENST00000449336 292 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC5.31□□□□□ -1.56
HMGB1P09429 DDX39BP2-208ENST00000453923 258 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.31□□□□□ -1.56
HMGB1P09429 AC005008.1-201ENST00000456151 612 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 RNA5SP310-201ENST00000459084 116 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC5.31□□□□□ -1.56
HMGB1P09429 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
HMGB1P09429 RPL7P47-201ENST00000497299 556 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC5.31□□□□□ -1.56
HMGB1P09429 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC5.31□□□□□ -1.56
HMGB1P09429 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 RNU6-714P-201ENST00000516963 103 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 RPL12P22-201ENST00000519073 490 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 AP001781.1-201ENST00000530977 207 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 AC055876.1-202ENST00000567053 138 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 VN1R82P-201ENST00000601481 356 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC5.31□□□□□ -1.56
HMGB1P09429 AC005962.2-201ENST00000611427 652 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 AL161616.1-201ENST00000611867 286 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 AC090246.1-201ENST00000616499 426 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 5S_rRNA.12-201ENST00000617631 107 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 AL136164.4-201ENST00000625013 2135 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
HMGB1P09429 ZNF876P-202ENST00000398732 1485 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 AC002546.1-201ENST00000588041 2504 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC5.31□□□□□ -1.56
HMGB1P09429 LINC00561-201ENST00000565815 2738 ntBASIC5.31□□□□□ -1.56
HMGB1P09429 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HMGB1P09429 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
HMGB1P09429 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HMGB1P09429 PCF11-AS1-201ENST00000602322 1516 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
HMGB1P09429 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
HMGB1P09429 RPS3AP24-201ENST00000407896 734 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 U3.42-201ENST00000408746 214 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 TRBV24OR9-2-201ENST00000416632 435 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 RPL36AP36-201ENST00000418616 301 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 RPL21P109-201ENST00000422213 475 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
HMGB1P09429 BX119904.4-201ENST00000424402 301 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 HMGN2P20-201ENST00000437531 273 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
HMGB1P09429 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC5.3□□□□□ -1.56
HMGB1P09429 PAXBP1P1-201ENST00000449315 447 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 AL136097.1-201ENST00000456945 913 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 RPL35AP28-201ENST00000459730 331 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 AL139099.1-201ENST00000497398 403 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC5.3□□□□□ -1.56
HMGB1P09429 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5.3□□□□□ -1.56
HMGB1P09429 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC5.3□□□□□ -1.56
HMGB1P09429 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC5.3□□□□□ -1.56
HMGB1P09429 AC020699.1-201ENST00000505161 445 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 TXNP6-201ENST00000510190 310 ntBASIC5.3□□□□□ -1.56
HMGB1P09429 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms