Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 AC023827.2-201ENST00000566880 1061 ntBASIC6.15□□□□□ -1.42
USB1Q9BQ65 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC6.15□□□□□ -1.42
USB1Q9BQ65 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC6.15□□□□□ -1.42
USB1Q9BQ65 MZT1P2-201ENST00000604387 248 ntBASIC6.15□□□□□ -1.42
USB1Q9BQ65 AP000550.3-201ENST00000637734 379 ntBASIC6.15□□□□□ -1.42
USB1Q9BQ65 AC099654.15-201ENST00000639802 509 ntBASIC6.15□□□□□ -1.42
USB1Q9BQ65 AC007529.1-201ENST00000418574 2178 ntBASIC6.15□□□□□ -1.43
USB1Q9BQ65 AC008560.1-201ENST00000510585 1766 ntAPPRIS P5 TSL 2 BASIC6.15□□□□□ -1.43
USB1Q9BQ65 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
USB1Q9BQ65 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.43
USB1Q9BQ65 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.43
USB1Q9BQ65 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC6.15□□□□□ -1.43
USB1Q9BQ65 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USB1Q9BQ65 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USB1Q9BQ65 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USB1Q9BQ65 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 RNU4-44P-201ENST00000363050 141 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 RNU6-371P-201ENST00000364283 108 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 RNU6-933P-201ENST00000384424 107 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 Y_RNA.533-201ENST00000384596 114 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 Y_RNA.592-201ENST00000410274 109 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 RNU6-325P-201ENST00000411132 105 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 RN7SKP296-201ENST00000411185 341 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 RPL21P90-201ENST00000415692 466 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 RPS15AP6-201ENST00000420703 385 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 AL135785.1-201ENST00000422554 399 ntTSL 3 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 H3F3BP1-201ENST00000440551 403 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 AC005517.1-201ENST00000452091 489 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 RPL21P41-201ENST00000459863 264 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 RPS29P26-201ENST00000477483 171 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 RPS23P5-201ENST00000495419 428 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 NDUFB5P1-201ENST00000508134 564 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 RNU6-1338P-201ENST00000516328 91 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 CR383656.7-201ENST00000548164 174 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 FLVCR2-204ENST00000553587 584 ntTSL 2 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 AC091078.2-201ENST00000557145 559 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 HMGN2P47-201ENST00000559378 272 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 MIR4675-201ENST00000577898 77 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 MIR5692A1-201ENST00000580523 69 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 AC067852.3-201ENST00000589177 561 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 AL158827.2-201ENST00000602494 330 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 IGKV2OR2-7-201ENST00000604652 304 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 SDR42E1P1-201ENST00000611327 477 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 AC005344.1-201ENST00000613391 459 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 AC073488.9-201ENST00000631601 754 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 AC073488.6-201ENST00000632293 754 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 AL691447.3-201ENST00000635020 330 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USB1Q9BQ65 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
USB1Q9BQ65 LCOR-201ENST00000286067 4542 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USB1Q9BQ65 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
USB1Q9BQ65 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USB1Q9BQ65 Z75746.1-201ENST00000440243 2080 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
USB1Q9BQ65 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 CA10-204ENST00000570565 2276 ntTSL 5 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
USB1Q9BQ65 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.14□□□□□ -1.43
USB1Q9BQ65 AC129502.1-201ENST00000623261 1654 ntBASIC6.14□□□□□ -1.43
USB1Q9BQ65 MED6-212ENST00000615788 1700 ntTSL 5 BASIC6.13□□□□□ -1.43
USB1Q9BQ65 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USB1Q9BQ65 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC6.13□□□□□ -1.43
USB1Q9BQ65 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC6.13□□□□□ -1.43
USB1Q9BQ65 AP000560.1-201ENST00000624150 1937 ntBASIC6.13□□□□□ -1.43
USB1Q9BQ65 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USB1Q9BQ65 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
USB1Q9BQ65 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
USB1Q9BQ65 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC6.13□□□□□ -1.43
USB1Q9BQ65 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC6.13□□□□□ -1.43
USB1Q9BQ65 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
USB1Q9BQ65 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USB1Q9BQ65 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USB1Q9BQ65 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC6.13□□□□□ -1.43
USB1Q9BQ65 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.13□□□□□ -1.43
USB1Q9BQ65 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USB1Q9BQ65 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USB1Q9BQ65 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USB1Q9BQ65 RN7SKP189-201ENST00000365042 330 ntBASIC6.13□□□□□ -1.43
USB1Q9BQ65 RNA5SP172-201ENST00000365061 118 ntBASIC6.13□□□□□ -1.43
USB1Q9BQ65 MIR187-201ENST00000385062 109 ntBASIC6.13□□□□□ -1.43
USB1Q9BQ65 SNORD115-46-201ENST00000390982 71 ntBASIC6.13□□□□□ -1.43
USB1Q9BQ65 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC6.13□□□□□ -1.43
USB1Q9BQ65 BX842559.1-201ENST00000419615 532 ntBASIC6.13□□□□□ -1.43
USB1Q9BQ65 AL354766.1-201ENST00000423396 542 ntBASIC6.13□□□□□ -1.43
USB1Q9BQ65 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms