Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC5.08□□□□□ -1.6
NUP88Q99567 AC090312.1-201ENST00000580637 348 ntBASIC5.08□□□□□ -1.6
NUP88Q99567 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.08□□□□□ -1.6
NUP88Q99567 SLC25A36P1-201ENST00000590111 465 ntBASIC5.08□□□□□ -1.6
NUP88Q99567 HMGB2P1-201ENST00000591146 634 ntBASIC5.08□□□□□ -1.6
NUP88Q99567 AL591034.3-201ENST00000605511 685 ntBASIC5.08□□□□□ -1.6
NUP88Q99567 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.08□□□□□ -1.6
NUP88Q99567 AC106028.5-201ENST00000610332 395 ntBASIC5.08□□□□□ -1.6
NUP88Q99567 AL158063.1-201ENST00000615349 536 ntBASIC5.08□□□□□ -1.6
NUP88Q99567 AC091905.2-201ENST00000623143 306 ntBASIC5.08□□□□□ -1.6
NUP88Q99567 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
NUP88Q99567 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.08□□□□□ -1.6
NUP88Q99567 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
NUP88Q99567 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.08□□□□□ -1.6
NUP88Q99567 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.08□□□□□ -1.6
NUP88Q99567 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
NUP88Q99567 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
NUP88Q99567 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
NUP88Q99567 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
NUP88Q99567 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC5.07□□□□□ -1.6
NUP88Q99567 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP88Q99567 MTND4P16-201ENST00000466108 1367 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 LARP1BP1-201ENST00000506036 1359 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 DDX43P2-201ENST00000604753 1354 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NUP88Q99567 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC5.07□□□□□ -1.6
NUP88Q99567 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
NUP88Q99567 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
NUP88Q99567 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
NUP88Q99567 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP88Q99567 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
NUP88Q99567 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5.07□□□□□ -1.6
NUP88Q99567 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.07□□□□□ -1.6
NUP88Q99567 RNA5SP317-201ENST00000410176 116 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 RN7SKP247-201ENST00000411094 308 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 RNA5SP311-201ENST00000411290 116 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 EIF4A1P3-201ENST00000411521 244 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP88Q99567 BTF3L4P1-201ENST00000413813 468 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 HMGB1P11-201ENST00000413899 637 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 Z99497.1-201ENST00000421282 135 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 RPL23AP38-201ENST00000423801 469 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 AC244035.1-201ENST00000430042 390 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 PAXBP1P1-201ENST00000449315 447 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 SETP11-201ENST00000473027 690 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NUP88Q99567 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
NUP88Q99567 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP88Q99567 RNA5SP315-201ENST00000516340 116 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 RNA5SP49-201ENST00000516450 115 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 RNA5SP312-201ENST00000517068 116 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 AC104986.1-201ENST00000517978 436 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP88Q99567 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP88Q99567 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC5.07□□□□□ -1.6
NUP88Q99567 TVP23BP1-201ENST00000557500 617 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 HSPE1P3-201ENST00000559254 309 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC5.07□□□□□ -1.6
NUP88Q99567 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC5.07□□□□□ -1.6
NUP88Q99567 AC092354.1-201ENST00000606057 376 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 AP002360.3-201ENST00000607673 710 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 AC107214.2-201ENST00000608204 634 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 AL391497.1-201ENST00000608671 547 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.07□□□□□ -1.6
NUP88Q99567 AC023043.4-201ENST00000612081 449 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 MIR7844-201ENST00000616161 122 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 AC009318.4-201ENST00000620496 486 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 AC006927.3-201ENST00000638789 384 ntBASIC5.07□□□□□ -1.6
NUP88Q99567 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP88Q99567 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP88Q99567 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC5.07□□□□□ -1.6
NUP88Q99567 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NUP88Q99567 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NUP88Q99567 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC5.06□□□□□ -1.6
NUP88Q99567 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC5.06□□□□□ -1.6
NUP88Q99567 GDI2P1-201ENST00000429312 1336 ntBASIC5.06□□□□□ -1.6
NUP88Q99567 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
NUP88Q99567 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
NUP88Q99567 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
NUP88Q99567 AL672167.1-206ENST00000356293 943 ntBASIC5.06□□□□□ -1.6
NUP88Q99567 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
NUP88Q99567 Y_RNA.436-201ENST00000384097 102 ntBASIC5.06□□□□□ -1.6
NUP88Q99567 ENSAP1-201ENST00000392855 326 ntBASIC5.06□□□□□ -1.6
NUP88Q99567 MIR320C1-201ENST00000408566 88 ntBASIC5.06□□□□□ -1.6
NUP88Q99567 RNA5SP36-201ENST00000410197 133 ntBASIC5.06□□□□□ -1.6
NUP88Q99567 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC5.06□□□□□ -1.6
NUP88Q99567 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.06□□□□□ -1.6
NUP88Q99567 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.06□□□□□ -1.6
NUP88Q99567 MTCO2P7-201ENST00000446518 666 ntBASIC5.06□□□□□ -1.6
NUP88Q99567 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.06□□□□□ -1.6
NUP88Q99567 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC5.06□□□□□ -1.6
NUP88Q99567 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC5.06□□□□□ -1.6
NUP88Q99567 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC5.06□□□□□ -1.6
NUP88Q99567 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.06□□□□□ -1.6
NUP88Q99567 AC091965.2-201ENST00000512324 613 ntBASIC5.06□□□□□ -1.6
NUP88Q99567 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC5.06□□□□□ -1.6
NUP88Q99567 RNA5SP519-201ENST00000516480 119 ntBASIC5.06□□□□□ -1.6
NUP88Q99567 Y_RNA.695-201ENST00000516715 107 ntBASIC5.06□□□□□ -1.6
NUP88Q99567 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC5.06□□□□□ -1.6
NUP88Q99567 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms