Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
CCDC140Q96MF4 FAM91A3P-201ENST00000456826 2544 ntBASIC4.65□□□□□ -1.66
CCDC140Q96MF4 U3.12-201ENST00000364498 214 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 RNA5SP211-201ENST00000365516 117 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 SNORA51.8-201ENST00000384234 132 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 SNORA51.9-201ENST00000384295 124 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 RNA5SP219-201ENST00000390940 113 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AL139039.1-201ENST00000401900 692 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 RNU4-64P-201ENST00000410795 131 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 MYL6P5-201ENST00000412707 459 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AL591848.1-201ENST00000413092 322 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 GAS5-202ENST00000414075 413 ntTSL 2 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 RPS7P15-201ENST00000415804 584 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 RPS12P23-201ENST00000419579 400 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 MTCO2P27-201ENST00000420740 428 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 PPP1R11P2-201ENST00000423543 382 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 PNKDP1-201ENST00000435914 430 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 BRK1P2-201ENST00000442875 223 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC073109.1-201ENST00000445066 978 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 ACA64.4-201ENST00000459070 127 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 VN1R17P-201ENST00000472048 1090 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 RPL21P93-201ENST00000480465 489 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 PPIAP19-201ENST00000486414 492 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC083795.1-201ENST00000491760 320 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 TRBVA-201ENST00000498804 316 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC098591.2-201ENST00000510152 315 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 RNU4-60P-201ENST00000517239 135 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 IGKV3D-25-201ENST00000519599 235 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC090136.1-201ENST00000520009 240 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AP006587.4-201ENST00000526053 529 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AL121603.1-201ENST00000553815 142 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC093249.1-201ENST00000567049 203 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC092121.1-201ENST00000569452 202 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AL591926.1-201ENST00000620542 217 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC090971.5-201ENST00000621102 293 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AC019278.1-201ENST00000623516 479 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 AL359757.2-201ENST00000624309 274 ntBASIC4.65□□□□□ -1.67
CCDC140Q96MF4 MVP-219ENST00000629059 120 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 UBA3-213ENST00000631029 123 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC140Q96MF4 THAP12P9-201ENST00000503971 2360 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC123769.1-201ENST00000530992 3192 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 ODF3-202ENST00000342593 386 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 SNORD1C-201ENST00000363315 78 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 SNORD113-7-201ENST00000363762 77 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 SNORA70.9-201ENST00000384370 135 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 RNU6-1297P-201ENST00000384415 104 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 MIR130B-202ENST00000385018 82 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 SNORD70.1-201ENST00000391007 85 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 RNU4-14P-201ENST00000410858 122 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 RPL7AP73-201ENST00000413490 353 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 RPS4XP5-201ENST00000419038 768 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AL139095.3-201ENST00000419672 1203 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.64□□□□□ -1.67
CCDC140Q96MF4 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC140Q96MF4 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms