Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 LSM6P2-201ENST00000552208 177 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 U7.8-201ENST00000619968 63 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 AF117829.1-206ENST00000621883 3802 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 RNA5SP196-201ENST00000625967 102 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
VPS39Q96JC1 MTCO1P4-201ENST00000520516 1409 ntBASIC3.7□□□□□ -1.82
VPS39Q96JC1 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.7□□□□□ -1.82
VPS39Q96JC1 PWAR6-201ENST00000552334 4618 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 AL021368.2-201ENST00000606125 5352 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS39Q96JC1 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS39Q96JC1 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS39Q96JC1 AC024560.2-201ENST00000507981 1497 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 AC010733.2-201ENST00000589496 5702 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 RNU6-989P-201ENST00000362756 107 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 RNU6-1249P-201ENST00000363237 111 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS39Q96JC1 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 MTND4LP20-201ENST00000402379 270 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 PPIAP31-201ENST00000405422 495 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 RNU4-65P-201ENST00000410473 140 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 AL512637.2-201ENST00000431287 1256 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 HSFY3P-201ENST00000444242 1191 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 MOB1AP2-201ENST00000446060 614 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 RPS29P31-201ENST00000446147 164 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 HMGN1P5-201ENST00000448591 263 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 GTF2IP12-201ENST00000456547 356 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 RN7SL330P-201ENST00000469709 307 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 AC010460.1-201ENST00000507087 466 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 PRELID3BP5-201ENST00000508612 460 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 AC002456.2-201ENST00000509356 380 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 AL163153.1-201ENST00000554223 283 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 AL020997.3-201ENST00000602843 359 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 Z82195.1-201ENST00000604558 398 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 AC128687.1-201ENST00000605304 619 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 VIS1.1-201ENST00000610517 203 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 AL390240.1-201ENST00000612950 384 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 AC005344.1-201ENST00000613391 459 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 AC073968.1-201ENST00000618594 637 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 FP236240.3-201ENST00000623061 327 ntBASIC3.69□□□□□ -1.82
VPS39Q96JC1 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS39Q96JC1 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
VPS39Q96JC1 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS39Q96JC1 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS39Q96JC1 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 AP004289.2-201ENST00000444413 1457 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS39Q96JC1 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS39Q96JC1 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS39Q96JC1 RPL7P26-201ENST00000333817 754 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 SNORD65C-201ENST00000390962 71 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 RPL22P22-201ENST00000395439 379 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS39Q96JC1 FNDC3CP-201ENST00000420795 1155 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 AL049610.1-201ENST00000423374 372 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 NIPA2P1-201ENST00000426223 976 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 AL096829.2-201ENST00000446582 742 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS39Q96JC1 NUTF2P7-201ENST00000453086 375 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 AL139099.1-201ENST00000497398 403 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 AC112518.2-201ENST00000508565 425 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 AC119751.1-201ENST00000513357 765 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 OR8R1P-201ENST00000543943 764 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS39Q96JC1 AC011611.5-201ENST00000552477 578 ntBASIC3.68□□□□□ -1.82
VPS39Q96JC1 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 131.3 ms