Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL049634.3-201ENST00000604968 457 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AC013244.3-201ENST00000605614 388 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AC245297.2-201ENST00000610119 565 ntBASIC3.54□□□□□ -1.84
CDX1P47902 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CDX1P47902 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC3.54□□□□□ -1.84
CDX1P47902 AC025588.4-201ENST00000615802 908 ntBASIC3.54□□□□□ -1.84
CDX1P47902 U7.8-201ENST00000619968 63 ntBASIC3.54□□□□□ -1.84
CDX1P47902 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
CDX1P47902 AC011330.2-201ENST00000621680 635 ntBASIC3.54□□□□□ -1.84
CDX1P47902 AC004009.2-201ENST00000623016 728 ntBASIC3.54□□□□□ -1.84
CDX1P47902 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
CDX1P47902 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
CDX1P47902 AC244517.1-201ENST00000606030 2086 ntBASIC3.54□□□□□ -1.84
CDX1P47902 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC3.54□□□□□ -1.84
CDX1P47902 RAD17P1-201ENST00000418130 2042 ntBASIC3.54□□□□□ -1.84
CDX1P47902 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.54□□□□□ -1.84
CDX1P47902 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.53□□□□□ -1.84
CDX1P47902 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CDX1P47902 AL356473.1-201ENST00000406203 1408 ntBASIC3.53□□□□□ -1.84
CDX1P47902 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CDX1P47902 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CDX1P47902 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CDX1P47902 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CDX1P47902 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.53□□□□□ -1.84
CDX1P47902 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
CDX1P47902 RNU6-600P-201ENST00000362524 99 ntBASIC3.53□□□□□ -1.84
CDX1P47902 SNORA31-201ENST00000362607 130 ntBASIC3.53□□□□□ -1.84
CDX1P47902 RNA5SP447-201ENST00000363749 119 ntBASIC3.53□□□□□ -1.84
CDX1P47902 RNU4-28P-201ENST00000364739 141 ntBASIC3.53□□□□□ -1.84
CDX1P47902 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.53□□□□□ -1.84
CDX1P47902 DHFRP6-201ENST00000401776 268 ntBASIC3.53□□□□□ -1.84
CDX1P47902 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.53□□□□□ -1.84
CDX1P47902 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.53□□□□□ -1.84
CDX1P47902 RAD23BP2-201ENST00000416003 1207 ntBASIC3.53□□□□□ -1.84
CDX1P47902 RPS23P10-201ENST00000416185 486 ntBASIC3.53□□□□□ -1.84
CDX1P47902 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC3.53□□□□□ -1.84
CDX1P47902 RPS24P7-201ENST00000416921 246 ntBASIC3.53□□□□□ -1.84
CDX1P47902 MTATP6P27-201ENST00000416987 621 ntBASIC3.53□□□□□ -1.84
CDX1P47902 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.53□□□□□ -1.84
CDX1P47902 TOMM22P1-201ENST00000418578 312 ntBASIC3.53□□□□□ -1.84
CDX1P47902 AL356387.2-201ENST00000422272 243 ntBASIC3.53□□□□□ -1.84
CDX1P47902 RPEP3-201ENST00000425462 676 ntBASIC3.53□□□□□ -1.84
CDX1P47902 RPL18P10-201ENST00000425606 538 ntBASIC3.53□□□□□ -1.84
CDX1P47902 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CDX1P47902 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC3.53□□□□□ -1.84
CDX1P47902 PRELID3BP10-201ENST00000431957 584 ntBASIC3.53□□□□□ -1.84
CDX1P47902 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.53□□□□□ -1.84
CDX1P47902 AL356535.1-201ENST00000440335 398 ntBASIC3.53□□□□□ -1.84
CDX1P47902 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.53□□□□□ -1.84
CDX1P47902 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC3.53□□□□□ -1.84
CDX1P47902 RPL5P32-201ENST00000454085 879 ntBASIC3.53□□□□□ -1.84
CDX1P47902 SUMO2P2-201ENST00000456482 255 ntBASIC3.53□□□□□ -1.84
CDX1P47902 snoU109.4-201ENST00000458953 143 ntBASIC3.53□□□□□ -1.84
CDX1P47902 AC097493.1-201ENST00000463958 372 ntBASIC3.53□□□□□ -1.84
CDX1P47902 PPIAP15-201ENST00000479662 484 ntBASIC3.53□□□□□ -1.84
CDX1P47902 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.53□□□□□ -1.84
CDX1P47902 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.53□□□□□ -1.84
CDX1P47902 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.53□□□□□ -1.84
CDX1P47902 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.53□□□□□ -1.84
CDX1P47902 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.53□□□□□ -1.84
CDX1P47902 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC3.53□□□□□ -1.84
CDX1P47902 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CDX1P47902 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.53□□□□□ -1.84
CDX1P47902 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC3.53□□□□□ -1.84
CDX1P47902 AC009097.3-201ENST00000563557 1018 ntBASIC3.53□□□□□ -1.84
CDX1P47902 MIR5186-201ENST00000577504 120 ntBASIC3.53□□□□□ -1.84
CDX1P47902 AC053481.3-201ENST00000577881 843 ntBASIC3.53□□□□□ -1.84
CDX1P47902 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.53□□□□□ -1.84
CDX1P47902 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.53□□□□□ -1.84
CDX1P47902 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.53□□□□□ -1.84
CDX1P47902 XIAPP1-201ENST00000603162 600 ntBASIC3.53□□□□□ -1.84
CDX1P47902 AC107952.2-201ENST00000606048 486 ntBASIC3.53□□□□□ -1.84
CDX1P47902 MIR432-201ENST00000606207 94 ntBASIC3.53□□□□□ -1.84
CDX1P47902 MIR486-1-201ENST00000612171 68 ntBASIC3.53□□□□□ -1.84
CDX1P47902 MIR6798-201ENST00000612887 67 ntBASIC3.53□□□□□ -1.84
CDX1P47902 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.53□□□□□ -1.84
CDX1P47902 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.53□□□□□ -1.84
CDX1P47902 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC3.53□□□□□ -1.84
CDX1P47902 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.53□□□□□ -1.84
CDX1P47902 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CDX1P47902 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CDX1P47902 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CDX1P47902 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CDX1P47902 AC139713.2-214ENST00000642059 1811 ntBASIC3.53□□□□□ -1.84
CDX1P47902 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.53□□□□□ -1.84
CDX1P47902 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
CDX1P47902 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.53□□□□□ -1.85
CDX1P47902 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.85
CDX1P47902 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
CDX1P47902 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.52□□□□□ -1.85
CDX1P47902 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.52□□□□□ -1.85
CDX1P47902 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.52□□□□□ -1.85
CDX1P47902 AC004925.1-201ENST00000624256 2706 ntBASIC3.52□□□□□ -1.85
CDX1P47902 AP001486.2-201ENST00000561652 5113 ntBASIC3.52□□□□□ -1.85
CDX1P47902 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CDX1P47902 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
CDX1P47902 SNORA51.2-201ENST00000364595 132 ntBASIC3.52□□□□□ -1.85
CDX1P47902 SNORA62-201ENST00000365493 153 ntBASIC3.52□□□□□ -1.85
CDX1P47902 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CDX1P47902 SNORD51-201ENST00000384320 80 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms