Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC4.46□□□□□ -1.7
CUX1P39880 OR5AK3P-201ENST00000527486 1297 ntBASIC4.46□□□□□ -1.7
CUX1P39880 AC092851.1-201ENST00000535964 478 ntBASIC4.46□□□□□ -1.7
CUX1P39880 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC4.46□□□□□ -1.7
CUX1P39880 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC4.46□□□□□ -1.7
CUX1P39880 AC098826.3-201ENST00000603823 466 ntBASIC4.46□□□□□ -1.7
CUX1P39880 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC4.46□□□□□ -1.7
CUX1P39880 AC022031.1-201ENST00000585985 2593 ntBASIC4.45□□□□□ -1.7
CUX1P39880 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CUX1P39880 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
CUX1P39880 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
CUX1P39880 SNORD62.1-201ENST00000362541 86 ntBASIC4.45□□□□□ -1.7
CUX1P39880 RN7SL75P-201ENST00000461926 281 ntBASIC4.45□□□□□ -1.7
CUX1P39880 AC018797.3-201ENST00000513388 1241 ntBASIC4.45□□□□□ -1.7
CUX1P39880 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.45□□□□□ -1.7
CUX1P39880 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC4.45□□□□□ -1.7
CUX1P39880 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
CUX1P39880 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
CUX1P39880 RN7SL442P-201ENST00000473804 320 ntBASIC4.44□□□□□ -1.7
CUX1P39880 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC4.44□□□□□ -1.7
CUX1P39880 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.44□□□□□ -1.7
CUX1P39880 AC090115.4-201ENST00000609970 188 ntBASIC4.44□□□□□ -1.7
CUX1P39880 AC025034.2-201ENST00000623264 286 ntBASIC4.44□□□□□ -1.7
CUX1P39880 AC073869.7-201ENST00000640874 297 ntBASIC4.44□□□□□ -1.7
CUX1P39880 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CUX1P39880 AC109315.1-201ENST00000584143 1347 ntBASIC4.43□□□□□ -1.7
CUX1P39880 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.43□□□□□ -1.7
CUX1P39880 U8.2-201ENST00000363156 134 ntBASIC4.43□□□□□ -1.7
CUX1P39880 SNORA36C-201ENST00000384289 132 ntBASIC4.43□□□□□ -1.7
CUX1P39880 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CUX1P39880 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC4.43□□□□□ -1.7
CUX1P39880 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC4.43□□□□□ -1.7
CUX1P39880 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.43□□□□□ -1.7
CUX1P39880 HPRT1P3-201ENST00000539521 576 ntBASIC4.43□□□□□ -1.7
CUX1P39880 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.43□□□□□ -1.7
CUX1P39880 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CUX1P39880 AC006020.1-201ENST00000420179 1854 ntBASIC4.43□□□□□ -1.7
CUX1P39880 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.43□□□□□ -1.7
CUX1P39880 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.42□□□□□ -1.7
CUX1P39880 MIR592-201ENST00000384959 97 ntBASIC4.42□□□□□ -1.7
CUX1P39880 RN7SKP247-201ENST00000411094 308 ntBASIC4.42□□□□□ -1.7
CUX1P39880 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CUX1P39880 B3GNT2P1-201ENST00000434960 952 ntBASIC4.42□□□□□ -1.7
CUX1P39880 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CUX1P39880 RNU6-991P-201ENST00000516168 107 ntBASIC4.42□□□□□ -1.7
CUX1P39880 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.42□□□□□ -1.7
CUX1P39880 MIR4635-201ENST00000583759 79 ntBASIC4.42□□□□□ -1.7
CUX1P39880 AC009159.1-201ENST00000618386 642 ntBASIC4.42□□□□□ -1.7
CUX1P39880 AC241377.1-201ENST00000619797 406 ntBASIC4.42□□□□□ -1.7
CUX1P39880 AC004972.1-201ENST00000623934 2209 ntBASIC4.42□□□□□ -1.7
CUX1P39880 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC4.42□□□□□ -1.7
CUX1P39880 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
CUX1P39880 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.42□□□□□ -1.7
CUX1P39880 AL583834.1-201ENST00000406943 343 ntBASIC4.41□□□□□ -1.7
CUX1P39880 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC4.41□□□□□ -1.7
CUX1P39880 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.41□□□□□ -1.7
CUX1P39880 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CUX1P39880 snoU13.23-201ENST00000458863 104 ntBASIC4.41□□□□□ -1.7
CUX1P39880 AC078785.3-201ENST00000476607 425 ntBASIC4.41□□□□□ -1.7
CUX1P39880 SRI-210ENST00000490437 570 ntTSL 2 BASIC4.41□□□□□ -1.7
CUX1P39880 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.41□□□□□ -1.7
CUX1P39880 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC4.41□□□□□ -1.7
CUX1P39880 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.41□□□□□ -1.7
CUX1P39880 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.41□□□□□ -1.7
CUX1P39880 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.41□□□□□ -1.7
CUX1P39880 AC011492.1-201ENST00000600023 315 ntBASIC4.41□□□□□ -1.7
CUX1P39880 AC005046.1-201ENST00000608515 625 ntBASIC4.41□□□□□ -1.7
CUX1P39880 AL356274.1-201ENST00000617064 410 ntBASIC4.41□□□□□ -1.7
CUX1P39880 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
CUX1P39880 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CUX1P39880 MIR181A2-201ENST00000384863 110 ntBASIC4.41□□□□□ -1.7
CUX1P39880 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CUX1P39880 AL513477.1-202ENST00000417061 214 ntBASIC4.41□□□□□ -1.7
CUX1P39880 FCF1P1-201ENST00000432690 571 ntBASIC4.41□□□□□ -1.7
CUX1P39880 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.41□□□□□ -1.7
CUX1P39880 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC4.41□□□□□ -1.7
CUX1P39880 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.41□□□□□ -1.7
CUX1P39880 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC4.41□□□□□ -1.7
CUX1P39880 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC4.41□□□□□ -1.7
CUX1P39880 LINC00901.1-201ENST00000617252 152 ntBASIC4.41□□□□□ -1.7
CUX1P39880 AC241585.2-209ENST00000638217 143 ntBASIC4.41□□□□□ -1.7
CUX1P39880 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
CUX1P39880 AP000526.1-201ENST00000603308 1388 ntBASIC4.4□□□□□ -1.7
CUX1P39880 AC093831.2-201ENST00000624393 3427 ntBASIC4.4□□□□□ -1.7
CUX1P39880 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC4.4□□□□□ -1.7
CUX1P39880 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
CUX1P39880 AC002524.1-201ENST00000411687 547 ntBASIC4.4□□□□□ -1.71
CUX1P39880 RAP1BP1-201ENST00000412709 553 ntBASIC4.4□□□□□ -1.71
CUX1P39880 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CUX1P39880 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC4.4□□□□□ -1.71
CUX1P39880 AC079228.1-201ENST00000624774 1049 ntBASIC4.4□□□□□ -1.71
CUX1P39880 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
CUX1P39880 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CUX1P39880 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.39□□□□□ -1.71
CUX1P39880 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CUX1P39880 AC008264.2-201ENST00000610193 3731 ntBASIC4.39□□□□□ -1.71
CUX1P39880 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.39□□□□□ -1.71
CUX1P39880 HMGB3P23-201ENST00000414981 585 ntBASIC4.39□□□□□ -1.71
CUX1P39880 AL451074.5-201ENST00000415894 435 ntBASIC4.39□□□□□ -1.71
CUX1P39880 AC092013.1-201ENST00000438795 332 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms