Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 SKP1P1-201ENST00000438081 489 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC010307.1-201ENST00000467206 836 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 RN7SKP157-201ENST00000516174 282 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 RNA5SP135-201ENST00000517019 125 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 OR8I1P-201ENST00000529291 931 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC087897.1-201ENST00000550134 156 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC044913.1-201ENST00000557200 430 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 MIR4666A-201ENST00000580160 79 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 OR4G1P-201ENST00000588632 938 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 HMGB1P50-201ENST00000605814 607 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AP005137.2-201ENST00000609238 400 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AL049777.1-201ENST00000622740 518 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC098679.5-201ENST00000624394 571 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC006504.1-201ENST00000562493 3666 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 SNORA71.3-201ENST00000362582 128 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 RNU6-115P-201ENST00000364310 107 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 MIR649-201ENST00000384843 97 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 RNU6-1176P-201ENST00000390955 107 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 RN7SKP56-201ENST00000410513 331 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 RPS29P4-201ENST00000414733 161 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC017079.2-201ENST00000416102 485 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 MTCYBP32-201ENST00000427945 1084 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 HMGN2P31-201ENST00000432430 273 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 RPL21P23-201ENST00000446654 460 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 NDUFA5P7-201ENST00000452914 242 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 HMGB3P30-201ENST00000457863 606 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC084357.1-201ENST00000473404 255 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC023632.1-201ENST00000518463 375 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC099489.2-201ENST00000574976 260 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC006116.10-201ENST00000591836 581 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 Z82195.1-201ENST00000604558 398 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC093673.2-201ENST00000609674 331 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC068722.2-201ENST00000618734 544 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC109454.4-201ENST00000623411 649 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AL359715.5-201ENST00000623431 443 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC004943.3-201ENST00000624116 600 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 SEPT7P7-201ENST00000420492 1301 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 CR381670.1-201ENST00000624291 1693 ntBASIC3.61□□□□□ -1.83
LHX3Q9UBR4 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.61□□□□□ -1.83
LHX3Q9UBR4 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 RNU6-921P-201ENST00000384361 107 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 SNORD116-23-201ENST00000384645 92 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 MIR449B-201ENST00000384995 97 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 MIR670-201ENST00000390142 98 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AL139098.1-201ENST00000407291 389 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 U3.39-201ENST00000408569 239 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 RN7SKP53-201ENST00000411337 315 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 CRYBB2P1-203ENST00000415709 538 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AL389915.1-201ENST00000422463 466 ntBASIC3.6□□□□□ -1.83
LHX3Q9UBR4 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.6□□□□□ -1.83
LHX3Q9UBR4 AC005517.2-201ENST00000424673 553 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms