Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
ZNF540Q8NDQ6 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC116667.1-201ENST00000604855 2072 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC103988.1-201ENST00000566382 2177 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 RNA5SP515-201ENST00000364570 118 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 PPIAP31-201ENST00000405422 495 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 RNA5SP317-201ENST00000410176 116 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 RN7SKP182-201ENST00000410772 298 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 RNA5SP311-201ENST00000411290 116 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 NRBF2P2-201ENST00000413087 861 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 RPL30P2-201ENST00000414021 291 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 RPL21P8-201ENST00000465083 535 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AL132838.2-201ENST00000492041 314 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC099522.1-202ENST00000514718 367 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 RNA5SP315-201ENST00000516340 116 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 SNORD59.2-201ENST00000516873 68 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 RNA5SP312-201ENST00000517068 116 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AP000619.3-201ENST00000535634 1127 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC006116.5-201ENST00000591936 559 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC133794.1-201ENST00000602731 914 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 GAS5-AS1-201ENST00000602767 694 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AL020997.3-201ENST00000602843 359 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 U7.8-201ENST00000619968 63 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC009318.4-201ENST00000620496 486 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC095031.1-201ENST00000623685 672 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 AC093908.1-201ENST00000623125 8092 ntBASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
ZNF540Q8NDQ6 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 RNU6-549P-201ENST00000384433 107 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 RNU1-13P-201ENST00000384499 162 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 RNU6-712P-201ENST00000410558 100 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 YPEL5P1-201ENST00000419731 367 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC233728.2-201ENST00000425348 757 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AL512661.1-201ENST00000434586 1253 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AL590762.3-201ENST00000436372 640 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC127537.2-201ENST00000439258 465 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 MTND2P19-201ENST00000449129 1012 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC008379.1-201ENST00000463655 464 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 RPL7P9-201ENST00000468715 747 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC020898.1-201ENST00000474167 787 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 GAPDHP39-201ENST00000481866 979 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 RN7SL691P-201ENST00000494487 301 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 OR5H3P-201ENST00000502817 919 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 MLLT10P2-201ENST00000506434 249 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 RNU6-711P-201ENST00000517255 106 ntBASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC3.6□□□□□ -1.83
ZNF540Q8NDQ6 SNRPGP1-201ENST00000553864 222 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms