Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AP001002.2-201ENST00000625137 386 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 LINC02471-203ENST00000641941 4752 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 RNU6-339P-201ENST00000384310 107 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 SNORD3H-201ENST00000384486 214 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 SYF2P2-201ENST00000417620 583 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 HSFY1P1-201ENST00000423928 1178 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 IFNNP1-201ENST00000429219 553 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 VDAC1P3-201ENST00000434069 851 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AL050341.1-201ENST00000447743 313 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 snoU13.3-201ENST00000459441 104 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AL133162.1-201ENST00000463228 453 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 RPL21P104-201ENST00000464143 478 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AC109471.1-201ENST00000511631 612 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 GTF2IP22-201ENST00000554443 182 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AC002487.1-201ENST00000604565 994 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AC012603.1-201ENST00000606424 528 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AC090116.1-201ENST00000615679 446 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AC078880.5-201ENST00000617845 421 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 MAPK10-372ENST00000641954 3413 ntBASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
HDDC3Q8N4P3 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC117529.2-201ENST00000512159 2068 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 MIR199A2-201ENST00000385289 110 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AL121978.1-201ENST00000402778 359 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 RNA5SP56-201ENST00000410277 118 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 RNU2-71P-201ENST00000411395 189 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 JKAMPP1-201ENST00000413804 919 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC009237.2-201ENST00000421358 284 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AL592437.1-201ENST00000443781 492 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 XACT-201ENST00000468762 497 ntTSL 5 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC106707.2-201ENST00000484182 374 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC118282.2-201ENST00000508739 374 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 MTCO3P44-201ENST00000510977 541 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 GMPSP1-201ENST00000514075 579 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 RNA5SP164-201ENST00000516533 110 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC109635.4-202ENST00000531666 412 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 MIR3690-201ENST00000580266 75 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 MIR7975-201ENST00000619350 68 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AC233309.1-201ENST00000619522 751 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 AL121594.5-201ENST00000631724 573 ntBASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HDDC3Q8N4P3 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
HDDC3Q8N4P3 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.84□□□□□ -1.8
HDDC3Q8N4P3 MAPK10-253ENST00000641010 4072 ntBASIC3.84□□□□□ -1.8
HDDC3Q8N4P3 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.8
HDDC3Q8N4P3 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
HDDC3Q8N4P3 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
HDDC3Q8N4P3 RNU6-353P-201ENST00000364266 108 ntBASIC3.83□□□□□ -1.8
HDDC3Q8N4P3 RNU6-619P-201ENST00000365146 108 ntBASIC3.83□□□□□ -1.8
HDDC3Q8N4P3 OR1L1-202ENST00000373686 1083 ntBASIC3.83□□□□□ -1.8
HDDC3Q8N4P3 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.83□□□□□ -1.8
HDDC3Q8N4P3 RNU6-549P-201ENST00000384433 107 ntBASIC3.83□□□□□ -1.8
HDDC3Q8N4P3 RNVU1-14-201ENST00000384770 164 ntBASIC3.83□□□□□ -1.8
HDDC3Q8N4P3 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
HDDC3Q8N4P3 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms