Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 RNU6-805P-201ENST00000365643 106 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 RNU6-851P-201ENST00000384565 107 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 MIR504-201ENST00000385065 83 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AC099063.2-201ENST00000446360 662 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AL162389.1-201ENST00000449233 177 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 SCGB1D5P-201ENST00000515134 247 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 RNA5SP24-201ENST00000516478 95 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 AP004607.9-201ENST00000618202 316 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 PWAR6-201ENST00000552334 4618 ntBASIC3.56□□□□□ -1.84
CCDC88AQ3V6T2 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 MIR148B-201ENST00000362252 99 ntBASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 MIR365B-201ENST00000362317 111 ntBASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 AL139039.1-201ENST00000401900 692 ntBASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 HMGB3P10-201ENST00000434734 572 ntBASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 HSPE1P6-201ENST00000479457 291 ntBASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 RPL31P13-201ENST00000484151 370 ntBASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 KLHL2P1-201ENST00000508691 521 ntBASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 RNU6-1231P-201ENST00000517185 103 ntBASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 MIR4644-201ENST00000579929 84 ntBASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 AC093311.1-201ENST00000506586 2021 ntBASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 AL592494.2-201ENST00000425455 1548 ntBASIC3.55□□□□□ -1.84
CCDC88AQ3V6T2 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 PTP4A1P1-201ENST00000420539 515 ntBASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 AL513328.1-201ENST00000446460 224 ntBASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 AP000936.2-201ENST00000447151 681 ntBASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 AC104687.1-201ENST00000485829 412 ntBASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 AC111000.2-201ENST00000507775 550 ntBASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 AC018797.3-201ENST00000513388 1241 ntBASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 MTCYBP19-201ENST00000517463 1124 ntBASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 MIR6715B-201ENST00000637172 77 ntBASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 U8.2-201ENST00000363156 134 ntBASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 NIPA2P2-201ENST00000496376 1083 ntBASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 AC083906.5-201ENST00000503722 328 ntBASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 AC011492.1-201ENST00000600023 315 ntBASIC3.54□□□□□ -1.84
CCDC88AQ3V6T2 ZNF658B-202ENST00000615961 3375 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 OR11H5P-202ENST00000641612 1325 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 AL049555.1-201ENST00000562834 1933 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 AC245291.1-201ENST00000419501 328 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 AC006960.1-201ENST00000419980 153 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 CBX1P4-201ENST00000439415 457 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 ST13P14-201ENST00000474095 734 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 RN7SKP43-201ENST00000516173 320 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 RN7SKP5-201ENST00000517045 272 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 AP000919.1-202ENST00000581139 1264 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 AC007566.2-201ENST00000603642 413 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 ASNSP3-201ENST00000451989 1306 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 AC108206.1-201ENST00000570186 4159 ntBASIC3.53□□□□□ -1.84
CCDC88AQ3V6T2 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 RNA5SP21-201ENST00000410917 96 ntBASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 AC009963.1-201ENST00000417265 157 ntBASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 SRIP2-201ENST00000428470 166 ntBASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 MTHFD2P4-201ENST00000515074 1025 ntBASIC3.52□□□□□ -1.85
CCDC88AQ3V6T2 RN7SKP272-201ENST00000516988 232 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms