Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC113403.1-201ENST00000604910 193 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AL360219.1-201ENST00000610230 366 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 AC067852.7-201ENST00000623270 535 ntBASIC4.2□□□□□ -1.74
COL28A1Q2UY09 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL28A1Q2UY09 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 RNA5SP130-201ENST00000364431 114 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 RHOT1P2-201ENST00000366423 333 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 RAP1BP1-201ENST00000412709 553 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 SNRPFP1-201ENST00000414761 252 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 MTND2P19-201ENST00000449129 1012 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 ISCUP1-201ENST00000454451 448 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 RPL18AP17-201ENST00000455326 198 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 ATG12P2-201ENST00000456830 416 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 RPL7P9-201ENST00000468715 747 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 MTCYBP37-201ENST00000510642 1133 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 GMPSP1-201ENST00000514075 579 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC027807.1-201ENST00000559921 996 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC037471.2-201ENST00000564941 598 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 ZNF415P1-201ENST00000582279 1166 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC103881.1-201ENST00000603476 538 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AL139395.1-201ENST00000603662 160 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AL031281.1-201ENST00000604049 488 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC115621.1-201ENST00000604653 858 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC112220.3-201ENST00000605502 502 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 RNU4-89P-201ENST00000607443 133 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC020634.1-201ENST00000608701 549 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC078899.5-201ENST00000612475 178 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AK6-205ENST00000618980 483 ntTSL 2 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC131159.1-201ENST00000621854 213 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC068057.2-201ENST00000624047 895 ntBASIC4.19□□□□□ -1.74
COL28A1Q2UY09 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL28A1Q2UY09 AC073346.2-201ENST00000624724 2058 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AL158163.1-201ENST00000603915 1649 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 Z73965.1-201ENST00000623412 2297 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 SNRPEP3-201ENST00000338402 276 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 RNU6-657P-201ENST00000383904 107 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 RNY3P9-201ENST00000384727 106 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AC073264.1-201ENST00000411508 416 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 Z74021.1-201ENST00000423610 407 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 OR8F1P-201ENST00000425243 930 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 BX276092.4-201ENST00000452056 248 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AL109741.2-201ENST00000455561 343 ntBASIC4.18□□□□□ -1.74
COL28A1Q2UY09 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.18□□□□□ -1.74
COL28A1Q2UY09 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms