Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 THAP12P8-201ENST00000447914 2115 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 MTND4P21-201ENST00000453886 1357 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL4A4P53420 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A4P53420 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.33□□□□□ -1.88
COL4A4P53420 UBE2V2P1-201ENST00000434717 398 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 HMGB3P11-201ENST00000440127 604 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 XKRYP6-201ENST00000440468 1116 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 XKRYP3-201ENST00000442113 1116 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.33□□□□□ -1.88
COL4A4P53420 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.33□□□□□ -1.88
COL4A4P53420 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.33□□□□□ -1.88
COL4A4P53420 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.33□□□□□ -1.88
COL4A4P53420 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.33□□□□□ -1.88
COL4A4P53420 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC3.33□□□□□ -1.88
COL4A4P53420 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.33□□□□□ -1.88
COL4A4P53420 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC3.33□□□□□ -1.88
COL4A4P53420 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.33□□□□□ -1.88
COL4A4P53420 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.33□□□□□ -1.88
COL4A4P53420 AC091515.1-201ENST00000548110 679 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.33□□□□□ -1.88
COL4A4P53420 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC3.33□□□□□ -1.88
COL4A4P53420 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.33□□□□□ -1.88
COL4A4P53420 H3F3AP1-201ENST00000559984 334 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.33□□□□□ -1.88
COL4A4P53420 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.33□□□□□ -1.88
COL4A4P53420 AC140725.3-201ENST00000616193 880 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AL391597.1-201ENST00000618707 694 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 MIR7843-201ENST00000622274 79 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
COL4A4P53420 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A4P53420 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A4P53420 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A4P53420 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.33□□□□□ -1.88
COL4A4P53420 AC021755.1-201ENST00000559747 1447 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AC012321.1-201ENST00000561622 1588 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A4P53420 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A4P53420 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A4P53420 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A4P53420 RPL7P8-201ENST00000411964 730 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 BMS1P22-201ENST00000414726 313 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 BTF3P9-201ENST00000418784 283 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.33□□□□□ -1.88
COL4A4P53420 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC3.33□□□□□ -1.88
COL4A4P53420 MRPS33P4-201ENST00000434892 317 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC3.33□□□□□ -1.88
COL4A4P53420 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC3.33□□□□□ -1.88
COL4A4P53420 RPS20P22-201ENST00000473700 357 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 UBL5P3-201ENST00000475112 231 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC3.33□□□□□ -1.88
COL4A4P53420 HMGB1P3-201ENST00000502802 616 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AC096571.1-202ENST00000506634 735 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.33□□□□□ -1.88
COL4A4P53420 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC3.33□□□□□ -1.88
COL4A4P53420 AC034159.1-201ENST00000513885 583 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 RNU1-41P-201ENST00000516161 162 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 RNU1-48P-201ENST00000516400 162 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 RN7SKP116-201ENST00000516902 319 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 RNU6-1231P-201ENST00000517185 103 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A4P53420 VN1R78P-201ENST00000597393 564 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AC012557.2-201ENST00000605919 418 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC3.33□□□□□ -1.88
COL4A4P53420 AC245100.7-201ENST00000609678 442 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AC139792.2-201ENST00000624218 587 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AC012020.1-201ENST00000624541 1728 ntBASIC3.33□□□□□ -1.88
COL4A4P53420 AL512283.1-201ENST00000606756 1384 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL4A4P53420 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL4A4P53420 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL4A4P53420 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.32□□□□□ -1.88
COL4A4P53420 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
COL4A4P53420 AC096644.4-201ENST00000563417 2912 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL4A4P53420 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC3.32□□□□□ -1.88
COL4A4P53420 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
COL4A4P53420 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC3.32□□□□□ -1.88
COL4A4P53420 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC3.32□□□□□ -1.88
COL4A4P53420 AC019097.1-201ENST00000424783 735 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC3.32□□□□□ -1.88
COL4A4P53420 ELOCP23-201ENST00000452014 332 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC3.32□□□□□ -1.88
COL4A4P53420 AC087312.1-201ENST00000471411 480 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.32□□□□□ -1.88
COL4A4P53420 AC108078.3-201ENST00000502633 489 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 RN7SKP60-201ENST00000516985 239 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 AP001207.2-201ENST00000519490 539 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 AC023538.1-201ENST00000534576 736 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.32□□□□□ -1.88
COL4A4P53420 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL4A4P53420 MTND1P24-201ENST00000552175 861 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.32□□□□□ -1.88
COL4A4P53420 MTND2P13-201ENST00000577438 1039 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 AC015917.1-201ENST00000579654 510 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 BNIP3P31-201ENST00000604515 566 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 AC064807.4-201ENST00000607201 407 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 AP003072.5-201ENST00000623872 773 ntBASIC3.32□□□□□ -1.88
COL4A4P53420 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.32□□□□□ -1.88
COL4A4P53420 AL445984.1-201ENST00000637834 659 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms