Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.11□□□□□ -1.75
SOX2P48431 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
SOX2P48431 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SOX2P48431 IRF5P1-201ENST00000504852 2164 ntBASIC4.11□□□□□ -1.75
SOX2P48431 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
SOX2P48431 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
SOX2P48431 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
SOX2P48431 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SOX2P48431 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
SOX2P48431 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SOX2P48431 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX2P48431 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX2P48431 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
SOX2P48431 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.1□□□□□ -1.75
SOX2P48431 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.1□□□□□ -1.75
SOX2P48431 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
SOX2P48431 RPL23P2-201ENST00000320371 421 ntBASIC4.1□□□□□ -1.75
SOX2P48431 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
SOX2P48431 RNY4P24-201ENST00000362735 96 ntBASIC4.1□□□□□ -1.75
SOX2P48431 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 RNA5SP372-201ENST00000390836 115 ntBASIC4.1□□□□□ -1.75
SOX2P48431 U3.25-201ENST00000391209 220 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AL590762.2-201ENST00000395798 571 ntBASIC4.1□□□□□ -1.75
SOX2P48431 MIR921-201ENST00000401133 56 ntBASIC4.1□□□□□ -1.75
SOX2P48431 MIR1286-201ENST00000408112 78 ntBASIC4.1□□□□□ -1.75
SOX2P48431 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 RPS15AP40-201ENST00000419621 391 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX2P48431 AL445669.1-201ENST00000426743 755 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC093414.1-201ENST00000434712 514 ntBASIC4.1□□□□□ -1.75
SOX2P48431 RSU1P2-202ENST00000437884 485 ntBASIC4.1□□□□□ -1.75
SOX2P48431 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX2P48431 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX2P48431 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX2P48431 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 BTF3P5-201ENST00000457252 467 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX2P48431 RN7SL172P-201ENST00000460535 303 ntBASIC4.1□□□□□ -1.75
SOX2P48431 PLGLA-201ENST00000465668 449 ntBASIC4.1□□□□□ -1.75
SOX2P48431 RPS20P21-201ENST00000466859 343 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC087312.1-201ENST00000471411 480 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX2P48431 AL358832.1-201ENST00000497800 389 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC112204.1-201ENST00000502591 103 ntBASIC4.1□□□□□ -1.75
SOX2P48431 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC093767.1-201ENST00000504523 156 ntBASIC4.1□□□□□ -1.75
SOX2P48431 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
SOX2P48431 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
SOX2P48431 NDUFB4P2-201ENST00000509515 391 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC011352.1-201ENST00000512300 793 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX2P48431 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX2P48431 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.1□□□□□ -1.75
SOX2P48431 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX2P48431 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC4.1□□□□□ -1.75
SOX2P48431 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.1□□□□□ -1.75
SOX2P48431 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 AC087481.2-201ENST00000565492 330 ntBASIC4.1□□□□□ -1.75
SOX2P48431 MIR4512-201ENST00000583257 77 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC4.1□□□□□ -1.75
SOX2P48431 AC098614.4-201ENST00000607601 462 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC103710.1-201ENST00000610003 901 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC007497.1-201ENST00000610421 561 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC091834.1-201ENST00000614543 472 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC104010.1-201ENST00000616889 150 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC009237.17-201ENST00000618111 748 ntBASIC4.1□□□□□ -1.75
SOX2P48431 AC009318.4-201ENST00000620496 486 ntBASIC4.1□□□□□ -1.75
SOX2P48431 SEPT14P19-203ENST00000633205 211 ntBASIC4.1□□□□□ -1.75
SOX2P48431 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.1□□□□□ -1.75
SOX2P48431 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SOX2P48431 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SOX2P48431 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.09□□□□□ -1.75
SOX2P48431 MTND5P26-201ENST00000426018 1752 ntBASIC4.09□□□□□ -1.75
SOX2P48431 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
SOX2P48431 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
SOX2P48431 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC4.09□□□□□ -1.75
SOX2P48431 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
SOX2P48431 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.09□□□□□ -1.75
SOX2P48431 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.09□□□□□ -1.75
SOX2P48431 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX2P48431 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.09□□□□□ -1.75
SOX2P48431 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX2P48431 AL391987.1-201ENST00000441025 200 ntBASIC4.09□□□□□ -1.75
SOX2P48431 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX2P48431 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SOX2P48431 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC4.09□□□□□ -1.75
SOX2P48431 NANOGNBP1-201ENST00000448444 480 ntBASIC4.09□□□□□ -1.75
SOX2P48431 AP000542.1-201ENST00000448473 371 ntBASIC4.09□□□□□ -1.75
SOX2P48431 SLC25A18P1-201ENST00000449385 454 ntBASIC4.09□□□□□ -1.75
SOX2P48431 AC005297.2-201ENST00000450430 606 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms