Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL445567.2-201ENST00000618935 498 ntBASIC4.34□□□□□ -1.71
PTPN9P43378 MIR8059-201ENST00000620427 81 ntBASIC4.34□□□□□ -1.71
PTPN9P43378 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
PTPN9P43378 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.34□□□□□ -1.71
PTPN9P43378 OR11H5P-202ENST00000641612 1325 ntBASIC4.34□□□□□ -1.71
PTPN9P43378 AL445523.1-201ENST00000451184 1362 ntBASIC4.34□□□□□ -1.71
PTPN9P43378 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
PTPN9P43378 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
PTPN9P43378 PNPT1P2-201ENST00000456768 2050 ntBASIC4.34□□□□□ -1.71
PTPN9P43378 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
PTPN9P43378 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.72
PTPN9P43378 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
PTPN9P43378 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
PTPN9P43378 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.33□□□□□ -1.72
PTPN9P43378 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PTPN9P43378 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
PTPN9P43378 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PTPN9P43378 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.33□□□□□ -1.72
PTPN9P43378 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PTPN9P43378 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC4.33□□□□□ -1.72
PTPN9P43378 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PTPN9P43378 RNU6-553P-201ENST00000364047 96 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PTPN9P43378 CUBN-201ENST00000377823 705 ntTSL 3 BASIC4.33□□□□□ -1.72
PTPN9P43378 Y_RNA.625-201ENST00000411256 107 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 AC073264.1-201ENST00000411508 416 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC4.33□□□□□ -1.72
PTPN9P43378 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.33□□□□□ -1.72
PTPN9P43378 NUP35P2-201ENST00000416748 943 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.33□□□□□ -1.72
PTPN9P43378 AC016712.1-201ENST00000431088 378 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.33□□□□□ -1.72
PTPN9P43378 AL591503.2-201ENST00000442314 1005 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.33□□□□□ -1.72
PTPN9P43378 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC4.33□□□□□ -1.72
PTPN9P43378 snoU13.7-201ENST00000459220 104 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 AC010301.1-201ENST00000473936 355 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 AC005726.1-201ENST00000494679 427 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 CEACAMP10-202ENST00000495431 496 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.33□□□□□ -1.72
PTPN9P43378 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.33□□□□□ -1.72
PTPN9P43378 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.33□□□□□ -1.72
PTPN9P43378 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.33□□□□□ -1.72
PTPN9P43378 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.33□□□□□ -1.72
PTPN9P43378 IGLVIV-53-201ENST00000520107 367 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC4.33□□□□□ -1.72
PTPN9P43378 HIGD1AP5-201ENST00000529959 259 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC4.33□□□□□ -1.72
PTPN9P43378 AC090502.2-201ENST00000549267 280 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.33□□□□□ -1.72
PTPN9P43378 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC4.33□□□□□ -1.72
PTPN9P43378 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.33□□□□□ -1.72
PTPN9P43378 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.33□□□□□ -1.72
PTPN9P43378 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.33□□□□□ -1.72
PTPN9P43378 AC068790.5-201ENST00000602741 355 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 AL139395.1-201ENST00000603662 160 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 AC018714.1-201ENST00000605028 208 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
PTPN9P43378 MIR7151-201ENST00000617477 60 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.33□□□□□ -1.72
PTPN9P43378 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
PTPN9P43378 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
PTPN9P43378 AC116667.1-201ENST00000604855 2072 ntBASIC4.33□□□□□ -1.72
PTPN9P43378 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PTPN9P43378 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
PTPN9P43378 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
PTPN9P43378 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PTPN9P43378 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PTPN9P43378 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
PTPN9P43378 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
PTPN9P43378 AC097504.1-201ENST00000515103 2415 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.32□□□□□ -1.72
PTPN9P43378 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PTPN9P43378 AC011477.1-204ENST00000623416 1325 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
PTPN9P43378 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
PTPN9P43378 AC126755.2-208ENST00000327792 462 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 AC138969.1-213ENST00000331436 462 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 SNRPEP3-201ENST00000338402 276 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 RNU1-85P-201ENST00000364127 164 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 SNORA37-201ENST00000384504 129 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 ATP5F1P4-201ENST00000397288 746 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.32□□□□□ -1.72
PTPN9P43378 MTCYBP38-201ENST00000417160 1123 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC4.32□□□□□ -1.72
PTPN9P43378 RPL36P19-201ENST00000430744 301 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.32□□□□□ -1.72
PTPN9P43378 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
PTPN9P43378 AC006011.1-201ENST00000442758 349 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
PTPN9P43378 AC105137.1-201ENST00000484355 562 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 AC090071.1-201ENST00000507713 644 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 AC110792.2-201ENST00000510278 224 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC4.32□□□□□ -1.72
PTPN9P43378 AC104057.1-201ENST00000515547 497 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 RNU6-583P-201ENST00000516012 92 ntBASIC4.32□□□□□ -1.72
PTPN9P43378 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC4.32□□□□□ -1.72
PTPN9P43378 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC4.32□□□□□ -1.72
PTPN9P43378 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC4.32□□□□□ -1.72
PTPN9P43378 AC090819.1-201ENST00000523800 1111 ntBASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms