Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.83□□□□□ -1.48
MSX1P28360 OR5D17P-201ENST00000531492 978 ntBASIC5.83□□□□□ -1.48
MSX1P28360 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.83□□□□□ -1.48
MSX1P28360 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX1P28360 AC073916.1-201ENST00000545095 130 ntBASIC5.83□□□□□ -1.48
MSX1P28360 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX1P28360 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC5.83□□□□□ -1.48
MSX1P28360 RAB27A-212ENST00000569493 1013 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 AC011494.1-201ENST00000596454 237 ntBASIC5.83□□□□□ -1.48
MSX1P28360 AL512329.2-201ENST00000607350 548 ntBASIC5.83□□□□□ -1.48
MSX1P28360 AC023813.4-201ENST00000607580 580 ntBASIC5.83□□□□□ -1.48
MSX1P28360 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.83□□□□□ -1.48
MSX1P28360 AL138960.1-201ENST00000613838 513 ntBASIC5.83□□□□□ -1.48
MSX1P28360 MIR6811-201ENST00000620409 58 ntBASIC5.83□□□□□ -1.48
MSX1P28360 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC5.83□□□□□ -1.48
MSX1P28360 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
MSX1P28360 CDC27P2-201ENST00000425026 1922 ntBASIC5.83□□□□□ -1.48
MSX1P28360 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.83□□□□□ -1.48
MSX1P28360 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5.83□□□□□ -1.48
MSX1P28360 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 AC112243.1-201ENST00000623949 3851 ntBASIC5.83□□□□□ -1.48
MSX1P28360 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
MSX1P28360 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
MSX1P28360 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
MSX1P28360 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX1P28360 AL136984.1-201ENST00000607611 1893 ntBASIC5.82□□□□□ -1.48
MSX1P28360 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
MSX1P28360 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
MSX1P28360 Y_RNA.2-201ENST00000362330 96 ntBASIC5.82□□□□□ -1.48
MSX1P28360 SNORD62.1-201ENST00000362541 86 ntBASIC5.82□□□□□ -1.48
MSX1P28360 Y_RNA.222-201ENST00000364264 102 ntBASIC5.82□□□□□ -1.48
MSX1P28360 RNU6-200P-201ENST00000364743 107 ntBASIC5.82□□□□□ -1.48
MSX1P28360 SNORD14.1-201ENST00000365609 90 ntBASIC5.82□□□□□ -1.48
MSX1P28360 Y_RNA.555-201ENST00000384673 110 ntBASIC5.82□□□□□ -1.48
MSX1P28360 SNORA41-201ENST00000384675 132 ntBASIC5.82□□□□□ -1.48
MSX1P28360 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
MSX1P28360 AL445189.1-201ENST00000405722 338 ntBASIC5.82□□□□□ -1.48
MSX1P28360 RNU2-38P-201ENST00000410856 79 ntBASIC5.82□□□□□ -1.48
MSX1P28360 RNU6-55P-201ENST00000411092 107 ntBASIC5.82□□□□□ -1.48
MSX1P28360 GSTM3P2-201ENST00000412746 530 ntBASIC5.82□□□□□ -1.48
MSX1P28360 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC5.82□□□□□ -1.48
MSX1P28360 RPLP0P7-201ENST00000416050 667 ntBASIC5.82□□□□□ -1.48
MSX1P28360 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.82□□□□□ -1.48
MSX1P28360 AC139712.2-201ENST00000424302 339 ntBASIC5.82□□□□□ -1.48
MSX1P28360 RPL21P112-201ENST00000434403 463 ntBASIC5.82□□□□□ -1.48
MSX1P28360 CYCSP24-201ENST00000445119 316 ntBASIC5.82□□□□□ -1.48
MSX1P28360 AL133244.1-201ENST00000456007 258 ntBASIC5.82□□□□□ -1.48
MSX1P28360 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX1P28360 AL445687.2-201ENST00000458156 728 ntBASIC5.82□□□□□ -1.48
MSX1P28360 SNORD97-201ENST00000459187 142 ntBASIC5.82□□□□□ -1.48
MSX1P28360 RN7SL254P-201ENST00000460609 284 ntBASIC5.82□□□□□ -1.48
MSX1P28360 AC012123.2-201ENST00000485809 248 ntBASIC5.82□□□□□ -1.48
MSX1P28360 AC026801.1-201ENST00000497178 464 ntBASIC5.82□□□□□ -1.48
MSX1P28360 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX1P28360 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.82□□□□□ -1.48
MSX1P28360 RNU6-1092P-201ENST00000516955 87 ntBASIC5.82□□□□□ -1.48
MSX1P28360 RNU6-182P-201ENST00000516970 105 ntBASIC5.82□□□□□ -1.48
MSX1P28360 Y_RNA.715-201ENST00000517082 110 ntBASIC5.82□□□□□ -1.48
MSX1P28360 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.82□□□□□ -1.48
MSX1P28360 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.82□□□□□ -1.48
MSX1P28360 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC5.82□□□□□ -1.48
MSX1P28360 AC009120.3-201ENST00000563335 499 ntBASIC5.82□□□□□ -1.48
MSX1P28360 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.82□□□□□ -1.48
MSX1P28360 AC005341.1-201ENST00000571086 708 ntBASIC5.82□□□□□ -1.48
MSX1P28360 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC5.82□□□□□ -1.48
MSX1P28360 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.82□□□□□ -1.48
MSX1P28360 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC5.82□□□□□ -1.48
MSX1P28360 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.82□□□□□ -1.48
MSX1P28360 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 AC103858.2-201ENST00000621471 543 ntBASIC5.82□□□□□ -1.48
MSX1P28360 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC5.82□□□□□ -1.48
MSX1P28360 U6.104-201ENST00000637979 90 ntBASIC5.82□□□□□ -1.48
MSX1P28360 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX1P28360 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.82□□□□□ -1.48
MSX1P28360 LINC01297-204ENST00000621052 4222 ntTSL 5 BASIC5.82□□□□□ -1.48
MSX1P28360 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 AC011933.2-201ENST00000578539 2790 ntBASIC5.82□□□□□ -1.48
MSX1P28360 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
MSX1P28360 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
MSX1P28360 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
MSX1P28360 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
MSX1P28360 AC074029.4-201ENST00000624796 1859 ntBASIC5.81□□□□□ -1.48
MSX1P28360 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
MSX1P28360 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC5.81□□□□□ -1.48
MSX1P28360 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms