Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A1P12109 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.37□□□□□ -1.55
COL6A1P12109 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL6A1P12109 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A1P12109 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC5.37□□□□□ -1.55
COL6A1P12109 AC005005.4-201ENST00000623789 16698 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A1P12109 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A1P12109 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A1P12109 AC026523.2-201ENST00000625039 7739 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
COL6A1P12109 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
COL6A1P12109 RNA5SP391-201ENST00000363456 119 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 SNORA70C-201ENST00000384538 135 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 RNU6-1011P-201ENST00000384668 107 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 snosnR66.1-201ENST00000391095 99 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC5.37□□□□□ -1.55
COL6A1P12109 AL357515.1-201ENST00000402967 542 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 RNU2-6P-201ENST00000411404 190 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 AC138393.2-201ENST00000414742 246 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 MTATP6P27-201ENST00000416987 621 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 AC007742.1-201ENST00000425789 329 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 RPL7P4-203ENST00000430239 730 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 ELOCP26-201ENST00000436067 329 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 ANKRD30BP3-201ENST00000444850 1070 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC5.37□□□□□ -1.55
COL6A1P12109 snoU109.1-201ENST00000459339 135 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 RPSAP51-201ENST00000497462 645 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC5.37□□□□□ -1.55
COL6A1P12109 AC091133.4-201ENST00000511142 308 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 RNA5SP216-201ENST00000516111 123 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 OR4A45P-201ENST00000529954 901 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC5.37□□□□□ -1.55
COL6A1P12109 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.37□□□□□ -1.55
COL6A1P12109 AC004217.3-201ENST00000551552 878 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC5.37□□□□□ -1.55
COL6A1P12109 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC5.37□□□□□ -1.55
COL6A1P12109 AC138915.2-201ENST00000569776 97 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 RN7SL802P-201ENST00000577858 299 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 RN7SL290P-201ENST00000578661 300 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC5.37□□□□□ -1.55
COL6A1P12109 AC069061.3-201ENST00000582254 823 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC5.37□□□□□ -1.55
COL6A1P12109 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.37□□□□□ -1.55
COL6A1P12109 AP000907.4-201ENST00000604143 237 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 AP004247.3-201ENST00000608682 624 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 ZYXP1-201ENST00000617638 118 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 AC007742.2-201ENST00000618226 398 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.37□□□□□ -1.55
COL6A1P12109 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL6A1P12109 AL354685.2-201ENST00000448218 1447 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.37□□□□□ -1.55
COL6A1P12109 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.37□□□□□ -1.55
COL6A1P12109 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.37□□□□□ -1.55
COL6A1P12109 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 AC090229.1-201ENST00000590983 1609 ntBASIC5.37□□□□□ -1.55
COL6A1P12109 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
COL6A1P12109 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC5.37□□□□□ -1.55
COL6A1P12109 RAD17P1-201ENST00000418130 2042 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A1P12109 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A1P12109 Y_RNA.61-201ENST00000362835 102 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 RNU5E-5P-201ENST00000365379 116 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 Y_RNA.372-201ENST00000365599 102 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A1P12109 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A1P12109 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A1P12109 SUGT1P1-201ENST00000379514 476 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A1P12109 RNU6-723P-201ENST00000383973 107 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
COL6A1P12109 RPL23AP29-201ENST00000397284 453 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AL078604.1-201ENST00000404609 466 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 PRELID3BP11-201ENST00000414230 479 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC5.36□□□□□ -1.55
COL6A1P12109 OR51A5P-201ENST00000415429 942 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 RPL36AP36-201ENST00000418616 301 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 RWDD4P2-201ENST00000426392 563 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC5.36□□□□□ -1.55
COL6A1P12109 HMGN2P27-201ENST00000427352 270 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.36□□□□□ -1.55
COL6A1P12109 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC5.36□□□□□ -1.55
COL6A1P12109 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC5.36□□□□□ -1.55
COL6A1P12109 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC5.36□□□□□ -1.55
COL6A1P12109 AC092809.1-201ENST00000441469 474 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC5.36□□□□□ -1.55
COL6A1P12109 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC5.36□□□□□ -1.55
COL6A1P12109 CYCSP34-201ENST00000458172 304 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 SNORA84-201ENST00000459229 133 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AC112206.1-201ENST00000468416 477 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC5.36□□□□□ -1.55
COL6A1P12109 HMGB1P21-201ENST00000502313 581 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 OR5H5P-201ENST00000503164 928 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 ARL2BPP6-201ENST00000512757 439 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.36□□□□□ -1.55
COL6A1P12109 AC109635.3-201ENST00000529536 185 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 PTP4A1P6-201ENST00000531034 478 ntBASIC5.36□□□□□ -1.55
COL6A1P12109 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A1P12109 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms