Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.79□□□□□ -1.8
LMX1BO60663 AC105074.1-201ENST00000623380 3095 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LMX1BO60663 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
LMX1BO60663 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.79□□□□□ -1.8
LMX1BO60663 SUGT1P1-201ENST00000379514 476 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
LMX1BO60663 SNORA37-201ENST00000384504 129 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AL583835.1-201ENST00000399570 407 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 USP9YP33-201ENST00000412220 421 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.79□□□□□ -1.8
LMX1BO60663 RPS23P10-201ENST00000416185 486 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 EIF4EP1-201ENST00000422311 642 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LMX1BO60663 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 DYNLL1P7-201ENST00000429273 258 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AC022022.1-201ENST00000430304 178 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.79□□□□□ -1.8
LMX1BO60663 MTND6P18-201ENST00000439477 513 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AL035551.1-201ENST00000446931 348 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 ST13P20-201ENST00000447996 1065 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 EPS15P1-201ENST00000448836 336 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 ABCF2P2-201ENST00000450549 296 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 RPL5P32-201ENST00000454085 879 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.79□□□□□ -1.8
LMX1BO60663 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC3.79□□□□□ -1.8
LMX1BO60663 AC104685.1-201ENST00000502445 371 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.79□□□□□ -1.8
LMX1BO60663 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LMX1BO60663 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC3.79□□□□□ -1.8
LMX1BO60663 RNY4P37-201ENST00000516225 96 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 OR5AK1P-201ENST00000524837 922 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.79□□□□□ -1.8
LMX1BO60663 AC107918.3-201ENST00000533272 382 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 PSMB7P1-201ENST00000556349 514 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 TRAV15-201ENST00000556680 249 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LMX1BO60663 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.79□□□□□ -1.8
LMX1BO60663 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.79□□□□□ -1.8
LMX1BO60663 AC087683.1-201ENST00000591187 441 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AC083899.3-201ENST00000603413 594 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AC090186.1-201ENST00000605991 572 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AC087241.4-201ENST00000612441 480 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 Z99129.1-201ENST00000612510 255 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AC131238.1-201ENST00000617135 328 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AC034229.5-201ENST00000624258 185 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AC127502.3-201ENST00000636170 1206 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 MKKS-204ENST00000639674 192 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LMX1BO60663 IQCB2P-201ENST00000401788 1633 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
LMX1BO60663 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
LMX1BO60663 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LMX1BO60663 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
LMX1BO60663 AL353743.4-201ENST00000422653 1547 ntBASIC3.79□□□□□ -1.8
LMX1BO60663 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.79□□□□□ -1.8
LMX1BO60663 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LMX1BO60663 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.78□□□□□ -1.8
LMX1BO60663 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
LMX1BO60663 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC3.78□□□□□ -1.8
LMX1BO60663 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.78□□□□□ -1.8
LMX1BO60663 AC008033.1-201ENST00000216407 1162 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LMX1BO60663 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
LMX1BO60663 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LMX1BO60663 RNU6-1215P-201ENST00000384441 102 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 Y_RNA.516-201ENST00000384541 124 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 RNU6-253P-201ENST00000384730 105 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 SDHCP2-201ENST00000398565 501 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AL445189.1-201ENST00000405722 338 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 RPL23AP47-201ENST00000408017 460 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC3.78□□□□□ -1.8
LMX1BO60663 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.78□□□□□ -1.8
LMX1BO60663 RPL31P54-201ENST00000429803 370 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 MED14P1-201ENST00000430517 648 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.78□□□□□ -1.8
LMX1BO60663 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC3.78□□□□□ -1.8
LMX1BO60663 Z74696.2-201ENST00000436514 498 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 PPIAP17-201ENST00000438507 471 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AL031667.1-201ENST00000440222 725 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 AC092641.1-201ENST00000440229 772 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 MTND1P30-201ENST00000441241 901 ntBASIC3.78□□□□□ -1.8
LMX1BO60663 RAB11AP1-201ENST00000442978 646 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms