Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 CYCSP4-201ENST00000429682 331 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 B3GNT2P1-201ENST00000434960 952 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 PPIAP17-201ENST00000438507 471 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 SNORD105B-201ENST00000458770 79 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 MTND3P3-201ENST00000505004 126 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC069306.1-201ENST00000507006 843 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 TMEM248P1-201ENST00000510579 951 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC104057.1-201ENST00000515547 497 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 RN7SKP13-201ENST00000515933 244 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 MTND5P21-201ENST00000531961 522 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 MIR3922-201ENST00000585192 84 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC090330.1-201ENST00000588646 764 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC010591.1-201ENST00000603941 649 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AL136370.1-201ENST00000608166 691 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AP000238.1-201ENST00000608759 426 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC069209.1-201ENST00000619282 651 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 OR8B1P-202ENST00000641132 1178 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AL732372.2-225ENST00000642124 456 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AC012020.1-201ENST00000624541 1728 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.64□□□□□ -1.83
LHX3Q9UBR4 AL356489.2-201ENST00000566968 3528 ntBASIC3.64□□□□□ -1.83
LHX3Q9UBR4 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 MTCO1P14-201ENST00000441695 1559 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 RNA5SP42-201ENST00000364278 115 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 RNU6-283P-201ENST00000364788 107 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 RNU6-1226P-201ENST00000384317 107 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 MIR200C-201ENST00000384980 68 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 RNU6-1000P-201ENST00000391066 106 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AL355379.1-201ENST00000405542 640 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 MIR1250-201ENST00000408098 113 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 RNA5SP239-201ENST00000410218 129 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AC027644.1-201ENST00000419595 298 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 HSPD1P21-201ENST00000436541 245 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 USP9YP7-201ENST00000436723 430 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 USP9YP32-201ENST00000452432 430 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AC133473.1-201ENST00000455173 299 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 GAPDHP39-201ENST00000481866 979 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 SUMO2P5-201ENST00000506790 245 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AC008837.1-201ENST00000511513 412 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 Vault.1-201ENST00000516474 102 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 RNU6-579P-201ENST00000516879 102 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 IGKV2D-19-201ENST00000523346 262 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 MIR4444-1-201ENST00000581696 74 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 MIR4444-2-201ENST00000584390 74 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 OR6C71P-202ENST00000641886 1107 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
LHX3Q9UBR4 AC090337.1-201ENST00000579651 2074 ntBASIC3.63□□□□□ -1.83
LHX3Q9UBR4 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 PABPC1P7-201ENST00000413177 1513 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AL121978.1-201ENST00000402778 359 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 RPL23AP48-201ENST00000406913 488 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AL603766.1-201ENST00000407763 664 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 BTF3P8-201ENST00000414577 526 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AC069157.1-201ENST00000421749 137 ntBASIC3.62□□□□□ -1.83
LHX3Q9UBR4 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC3.62□□□□□ -1.83
LHX3Q9UBR4 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms