Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC108078.3-201ENST00000502633 489 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AC096751.1-202ENST00000502691 1067 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 HMGB1P28-201ENST00000507778 552 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 MTND4LP26-201ENST00000518144 282 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AC245505.1-201ENST00000556398 224 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 PCMTD1P2-201ENST00000565017 355 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AC087481.2-201ENST00000565492 330 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AC093519.1-201ENST00000566109 298 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 ANKRD36BP2-206ENST00000575193 1245 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AC209154.1-201ENST00000582156 337 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AC019193.2-201ENST00000610012 634 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AC120349.2-201ENST00000625002 298 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AC017104.4-201ENST00000636283 1592 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AL359922.3-201ENST00000624779 1670 ntBASIC4.73□□□□□ -1.65
DKK3Q9UBP4 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.73□□□□□ -1.65
DKK3Q9UBP4 AC007529.1-201ENST00000418574 2178 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC092447.7-201ENST00000422212 1621 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC090229.1-201ENST00000590983 1609 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 Y_RNA.41-201ENST00000362646 102 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 RNU6-216P-201ENST00000363282 104 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 RNU6-374P-201ENST00000364146 108 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 SNORD113.2-201ENST00000364166 89 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 RNU6-660P-201ENST00000364566 109 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 MIR506-201ENST00000384998 124 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 RNA5SP239-201ENST00000410218 129 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 RN7SKP106-201ENST00000410832 272 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 RAC1P3-201ENST00000416129 580 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 OFD1P12Y-201ENST00000427963 1207 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AL512649.1-201ENST00000428997 581 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 DYNLL1P7-201ENST00000429273 258 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC004938.1-201ENST00000438468 308 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 NF1P3-201ENST00000457709 450 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 CYCSP34-201ENST00000458172 304 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 TPT1P7-201ENST00000458300 517 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC090142.1-201ENST00000465776 462 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC090686.1-201ENST00000481577 749 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 RPL36AP41-201ENST00000493820 306 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 KLRA1P-201ENST00000503499 986 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 MTND2P33-201ENST00000506452 1031 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 RPL7L1P13-201ENST00000511702 739 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 IGHV3-32-201ENST00000519182 355 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC087276.1-201ENST00000529659 480 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 SLC2A13P1-201ENST00000531560 322 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC136618.2-201ENST00000575091 400 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC073091.2-201ENST00000603205 907 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AL596327.1-201ENST00000603629 213 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC138749.5-201ENST00000611461 208 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 MIR8069-1-201ENST00000616627 86 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 MIR8069-2-201ENST00000621412 86 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC015804.1-201ENST00000622935 435 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 AC092435.4-201ENST00000623012 4159 ntBASIC4.72□□□□□ -1.65
DKK3Q9UBP4 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
DKK3Q9UBP4 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms