Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
CCDC28BQ9BUN5 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC28BQ9BUN5 AL049737.1-201ENST00000413920 1403 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC012618.3-205ENST00000637896 1496 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AL512646.1-201ENST00000269395 1077 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 U3.22-201ENST00000391120 215 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AL079342.2-201ENST00000403367 482 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 RNU2-37P-201ENST00000410695 177 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 RNU4-6P-201ENST00000410804 122 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 RNU4-22P-201ENST00000411058 166 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC234782.4-201ENST00000417646 1048 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AL513175.2-201ENST00000422071 443 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 XKRYP1-201ENST00000423438 492 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 C1DP1-201ENST00000426049 402 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 XKRYP2-201ENST00000432915 492 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC084290.1-201ENST00000434995 374 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 ELOCP13-201ENST00000443934 329 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 Z73417.1-201ENST00000447373 778 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC112492.1-201ENST00000449607 712 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 PTGES3P5-201ENST00000455109 434 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 RNU6-416P-201ENST00000516265 103 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC068657.1-201ENST00000520807 306 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 EEF1A1P37-201ENST00000522748 715 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 NIFKP8-201ENST00000560500 874 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC011477.5-201ENST00000586571 259 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 CCDC58P3-201ENST00000590792 430 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC234772.3-201ENST00000602277 528 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC022022.2-201ENST00000602989 360 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AL583856.2-201ENST00000606298 543 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AC009237.15-201ENST00000610252 501 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 SNORA50A-202ENST00000629536 136 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 AF001550.2-201ENST00000636643 217 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 SUCLA2P2-201ENST00000417269 1309 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 SGO1P1-201ENST00000603525 1447 ntBASIC3.61□□□□□ -1.83
CCDC28BQ9BUN5 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 RNA5SP42-201ENST00000364278 115 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 RNA5SP130-201ENST00000364431 114 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 MIR16-1-201ENST00000385271 89 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 OR8G2P-201ENST00000412796 908 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 AC126124.2-201ENST00000413542 321 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 HIGD1AP15-201ENST00000416198 280 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 AL592293.2-201ENST00000422292 996 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 AL772161.1-201ENST00000439130 476 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 CR769776.1-201ENST00000441254 787 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 NPM1P13-201ENST00000452663 865 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 MRPL35P4-201ENST00000453682 566 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 HMGB3P30-201ENST00000457863 606 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 GAPDHP39-201ENST00000481866 979 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 AC078817.1-201ENST00000492623 435 ntBASIC3.6□□□□□ -1.83
CCDC28BQ9BUN5 AC098862.1-201ENST00000504991 413 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms