Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC009963.2-201ENST00000453431 138 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC118758.1-202ENST00000454719 225 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 RPL23AP40-201ENST00000487630 390 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 RNU6-559P-201ENST00000516151 98 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 RNU6-864P-201ENST00000516256 108 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 RNA5SP473-201ENST00000516402 125 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AL049779.2-201ENST00000553847 315 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC106782.4-201ENST00000568264 210 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 MIR4502-201ENST00000580432 81 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC022432.1-201ENST00000595739 310 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 BNIP3P25-201ENST00000596023 559 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC068768.2-201ENST00000602352 343 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 XIAPP1-201ENST00000603162 600 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC008638.3-201ENST00000603341 463 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AC010680.4-201ENST00000605334 543 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 uc_338.26-201ENST00000612659 160 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 MTND4LP32-201ENST00000636111 270 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 AP003486.1-201ENST00000525716 3994 ntBASIC4.68□□□□□ -1.66
CCDC140Q96MF4 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
CCDC140Q96MF4 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC008627.1-201ENST00000517511 1704 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.326-201ENST00000365176 113 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 SNORD3H-201ENST00000384486 214 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.579-201ENST00000390939 94 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC110754.1-201ENST00000399740 601 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 RPL23AP17-201ENST00000401064 499 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 RNU6-387P-201ENST00000411331 105 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 METTL15P3-201ENST00000415522 1221 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AL353729.1-201ENST00000425044 720 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AL161722.2-201ENST00000434731 981 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AL353662.1-201ENST00000439099 327 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AL121871.1-201ENST00000443413 436 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 SNORD19B-201ENST00000459623 84 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC104339.1-201ENST00000465478 348 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 RN7SKP13-201ENST00000515933 244 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 Y_RNA.689-201ENST00000516589 107 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 RNU6-1088P-201ENST00000516850 104 ntBASIC4.67□□□□□ -1.66
CCDC140Q96MF4 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.67□□□□□ -1.66
CCDC140Q96MF4 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 117 ms