Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL136520.1-202ENST00000555494 763 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 ZNF192P1-203ENST00000565888 810 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 MIR4644-201ENST00000579929 84 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 AC092474.3-201ENST00000603022 568 ntBASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.88□□□□□ -1.79
HDDC3Q8N4P3 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 Y_RNA.110-201ENST00000363220 99 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 SNORD6-201ENST00000365444 73 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 RNU6-1181P-201ENST00000384191 106 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 USP9YP19-201ENST00000412165 485 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 LIPT1P1-201ENST00000415870 1186 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 Z74696.2-201ENST00000436514 498 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 CYCSP43-201ENST00000438233 310 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 RPL32P34-201ENST00000486380 400 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 WBP1LP4-201ENST00000505043 344 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 AC011352.3-201ENST00000505162 593 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 RNU6-1073P-201ENST00000517182 106 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 LSM6P2-201ENST00000552208 177 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 AC005412.1-201ENST00000580812 1049 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 AC015911.5-201ENST00000587076 451 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 AC103710.3-201ENST00000608157 948 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 AL354760.1-201ENST00000608357 643 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 AL354976.1-201ENST00000613843 387 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 MIR4727-201ENST00000622232 55 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 AC098679.5-201ENST00000624394 571 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 U6.105-201ENST00000637379 88 ntBASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HDDC3Q8N4P3 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AP001350.1-201ENST00000601906 1524 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 Y_RNA.111-201ENST00000363248 100 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 RNU6-354P-201ENST00000383862 107 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 RNU6-610P-201ENST00000384264 107 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 MIR218-2-201ENST00000385006 110 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 MTCO2P31-201ENST00000402702 684 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 GSTA8P-201ENST00000404253 637 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 MIR1183-201ENST00000408856 89 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 TAF13P2-201ENST00000416876 286 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 TOMM22P1-201ENST00000418578 312 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 RPL21P66-201ENST00000426566 466 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 B3GNT2P1-201ENST00000434960 952 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 NDUFA5P7-201ENST00000452914 242 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 RNU7-140P-201ENST00000459546 60 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 RPL23AP62-201ENST00000463396 453 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 VN1R17P-201ENST00000472048 1090 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 RN7SL293P-201ENST00000481765 281 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 RPS4XP13-201ENST00000483219 789 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AL358832.1-201ENST00000497800 389 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AC025554.1-201ENST00000505641 188 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AC104619.4-201ENST00000510773 249 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AL669831.4-202ENST00000590817 238 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 DPRXP5-201ENST00000604662 539 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AC006023.2-201ENST00000609916 167 ntBASIC3.86□□□□□ -1.79
HDDC3Q8N4P3 AL442067.2-201ENST00000614033 363 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms