Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC239868.4-201ENST00000608318 671 ntBASIC4.05□□□□□ -1.76
CLIP4Q8N3C7 AC106028.5-201ENST00000610332 395 ntBASIC4.05□□□□□ -1.76
CLIP4Q8N3C7 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CLIP4Q8N3C7 MIR7844-201ENST00000616161 122 ntBASIC4.05□□□□□ -1.76
CLIP4Q8N3C7 AC073968.1-201ENST00000618594 637 ntBASIC4.05□□□□□ -1.76
CLIP4Q8N3C7 AL356266.1-201ENST00000623311 483 ntBASIC4.05□□□□□ -1.76
CLIP4Q8N3C7 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.05□□□□□ -1.76
CLIP4Q8N3C7 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
CLIP4Q8N3C7 A2MP1-204ENST00000566278 4130 ntBASIC4.05□□□□□ -1.76
CLIP4Q8N3C7 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.05□□□□□ -1.76
CLIP4Q8N3C7 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.05□□□□□ -1.76
CLIP4Q8N3C7 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CLIP4Q8N3C7 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 RNU6-374P-201ENST00000364146 108 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 Y_RNA.517-201ENST00000384551 106 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 RNU6-1151P-201ENST00000384684 107 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 RNA5SP306-201ENST00000411087 107 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 FCF1P2-201ENST00000415284 583 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 RPL23AP39-201ENST00000415533 405 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 CYP4F29P-201ENST00000420685 446 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 CYCSP46-201ENST00000423569 204 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 RPL7P28-201ENST00000437739 740 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AL162591.2-201ENST00000449634 317 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 HMGB3P22-202ENST00000451823 572 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC053481.1-201ENST00000467217 306 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AL592156.1-201ENST00000508758 304 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC079140.3-201ENST00000511111 550 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 MTND1P5-201ENST00000517906 940 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AF279873.1-201ENST00000523393 313 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC107918.3-201ENST00000533272 382 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC093519.1-201ENST00000566109 298 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC074051.3-201ENST00000570238 358 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC079089.3-201ENST00000603094 673 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC073648.5-201ENST00000603502 305 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 HMGB1P50-201ENST00000605814 607 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC024560.3-201ENST00000608482 349 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AL049539.1-201ENST00000611964 459 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC010678.1-201ENST00000614118 713 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 MIR6780A-201ENST00000615089 68 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC123768.4-201ENST00000616244 701 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC243756.2-201ENST00000618406 463 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC009509.4-201ENST00000619202 509 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 AC092650.2-201ENST00000619984 902 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 BMS1P21-201ENST00000634565 365 ntBASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
CLIP4Q8N3C7 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 AL121657.1-201ENST00000327215 531 ntBASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 Y_RNA.25-201ENST00000362528 102 ntBASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 RNU6-660P-201ENST00000364566 109 ntBASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 Y_RNA.302-201ENST00000364997 102 ntBASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 Y_RNA.359-201ENST00000365498 102 ntBASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 MIR3065-201ENST00000390137 79 ntBASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 SNORD66.1-201ENST00000391230 76 ntBASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 DEFB108C-201ENST00000400154 252 ntBASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.03□□□□□ -1.76
CLIP4Q8N3C7 JKAMPP1-201ENST00000413804 919 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms