Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.68□□□□□ -1.82
SOX3P41225 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SOX3P41225 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.68□□□□□ -1.82
SOX3P41225 AC091516.1-201ENST00000549191 703 ntBASIC3.68□□□□□ -1.82
SOX3P41225 AC074029.1-201ENST00000552531 1044 ntBASIC3.68□□□□□ -1.82
SOX3P41225 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.68□□□□□ -1.82
SOX3P41225 EIF5A2P1-201ENST00000564027 460 ntBASIC3.68□□□□□ -1.82
SOX3P41225 AC093519.1-201ENST00000566109 298 ntBASIC3.68□□□□□ -1.82
SOX3P41225 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.68□□□□□ -1.82
SOX3P41225 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC3.68□□□□□ -1.82
SOX3P41225 AC245036.5-201ENST00000596330 847 ntBASIC3.68□□□□□ -1.82
SOX3P41225 Z99289.3-201ENST00000605586 594 ntBASIC3.68□□□□□ -1.82
SOX3P41225 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SOX3P41225 AC009464.1-201ENST00000615731 469 ntBASIC3.68□□□□□ -1.82
SOX3P41225 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SOX3P41225 AL355493.4-201ENST00000618530 292 ntBASIC3.68□□□□□ -1.82
SOX3P41225 RNU6-156P-201ENST00000621869 107 ntBASIC3.68□□□□□ -1.82
SOX3P41225 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
SOX3P41225 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
SOX3P41225 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SOX3P41225 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.68□□□□□ -1.82
SOX3P41225 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.68□□□□□ -1.82
SOX3P41225 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.68□□□□□ -1.82
SOX3P41225 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SOX3P41225 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SOX3P41225 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SOX3P41225 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SOX3P41225 MTND5P31-201ENST00000419366 1374 ntBASIC3.67□□□□□ -1.82
SOX3P41225 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 RNA5SP399-201ENST00000364003 117 ntBASIC3.67□□□□□ -1.82
SOX3P41225 SUGT1P1-201ENST00000379514 476 ntBASIC3.67□□□□□ -1.82
SOX3P41225 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
SOX3P41225 RNU6-444P-201ENST00000383988 108 ntBASIC3.67□□□□□ -1.82
SOX3P41225 Y_RNA.465-201ENST00000384293 102 ntBASIC3.67□□□□□ -1.82
SOX3P41225 DSTNP4-201ENST00000399472 474 ntBASIC3.67□□□□□ -1.82
SOX3P41225 AC119751.3-201ENST00000399720 670 ntBASIC3.67□□□□□ -1.82
SOX3P41225 AC025750.1-201ENST00000399891 379 ntBASIC3.67□□□□□ -1.82
SOX3P41225 AL121978.1-201ENST00000402778 359 ntBASIC3.67□□□□□ -1.82
SOX3P41225 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC3.67□□□□□ -1.82
SOX3P41225 FCF1P2-201ENST00000415284 583 ntBASIC3.67□□□□□ -1.82
SOX3P41225 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 BOLA3P4-201ENST00000418151 400 ntBASIC3.67□□□□□ -1.82
SOX3P41225 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC3.67□□□□□ -1.82
SOX3P41225 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 USP9YP31-201ENST00000431405 881 ntBASIC3.67□□□□□ -1.82
SOX3P41225 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.67□□□□□ -1.82
SOX3P41225 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.67□□□□□ -1.82
SOX3P41225 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 AC241584.1-201ENST00000438469 1241 ntBASIC3.67□□□□□ -1.82
SOX3P41225 RPL23AP76-201ENST00000441860 458 ntBASIC3.67□□□□□ -1.82
SOX3P41225 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.67□□□□□ -1.82
SOX3P41225 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 AL034418.1-201ENST00000448675 860 ntBASIC3.67□□□□□ -1.82
SOX3P41225 FABP3P2-201ENST00000453169 399 ntBASIC3.67□□□□□ -1.82
SOX3P41225 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.67□□□□□ -1.82
SOX3P41225 AC068587.2-201ENST00000478386 781 ntBASIC3.67□□□□□ -1.82
SOX3P41225 MTATP6P22-201ENST00000507369 598 ntBASIC3.67□□□□□ -1.82
SOX3P41225 AC034244.1-201ENST00000507687 207 ntBASIC3.67□□□□□ -1.82
SOX3P41225 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC3.67□□□□□ -1.82
SOX3P41225 RNA5SP179-201ENST00000517284 121 ntBASIC3.67□□□□□ -1.82
SOX3P41225 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
SOX3P41225 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.67□□□□□ -1.82
SOX3P41225 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 NBEAP1-201ENST00000554452 979 ntBASIC3.67□□□□□ -1.82
SOX3P41225 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC3.67□□□□□ -1.82
SOX3P41225 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.67□□□□□ -1.82
SOX3P41225 AC005255.1-201ENST00000593748 216 ntBASIC3.67□□□□□ -1.82
SOX3P41225 AL390838.2-201ENST00000602394 274 ntBASIC3.67□□□□□ -1.82
SOX3P41225 AC091167.4-201ENST00000605079 184 ntBASIC3.67□□□□□ -1.82
SOX3P41225 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 AL161637.1-201ENST00000622380 412 ntBASIC3.67□□□□□ -1.82
SOX3P41225 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.67□□□□□ -1.82
SOX3P41225 AF001550.2-201ENST00000636643 217 ntBASIC3.67□□□□□ -1.82
SOX3P41225 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
SOX3P41225 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
SOX3P41225 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
SOX3P41225 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SOX3P41225 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.66□□□□□ -1.82
SOX3P41225 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
SOX3P41225 AC025125.1-201ENST00000624743 1922 ntBASIC3.66□□□□□ -1.82
SOX3P41225 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.66□□□□□ -1.82
SOX3P41225 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.66□□□□□ -1.82
SOX3P41225 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
SOX3P41225 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
SOX3P41225 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
SOX3P41225 RNU6-492P-201ENST00000363035 104 ntBASIC3.66□□□□□ -1.82
SOX3P41225 RNU6-251P-201ENST00000363235 104 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.66□□□□□ -1.82
SOX3P41225 TAS2R15P-201ENST00000390674 928 ntBASIC3.66□□□□□ -1.82
SOX3P41225 MTND4P13-201ENST00000402078 1023 ntBASIC3.66□□□□□ -1.82
SOX3P41225 AL445189.1-201ENST00000405722 338 ntBASIC3.66□□□□□ -1.82
SOX3P41225 MIR1251-201ENST00000408552 70 ntBASIC3.66□□□□□ -1.82
SOX3P41225 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.66□□□□□ -1.82
SOX3P41225 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms