Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 AC068870.1-201ENST00000563737 2455 ntBASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 SRRM1P3-201ENST00000426911 2678 ntBASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 MTCO1P12-201ENST00000414273 1543 ntBASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
UBE3DQ7Z6J8 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 OR1S2-201ENST00000302592 978 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 Y_RNA.22-201ENST00000362492 102 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 Y_RNA.197-201ENST00000364004 102 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 RNU4-66P-201ENST00000365199 138 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 RN7SKP292-201ENST00000365522 317 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AL606923.1-201ENST00000406616 190 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC245054.2-201ENST00000415639 319 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC234779.1-201ENST00000425910 285 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AL662874.1-201ENST00000426065 230 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC108059.2-201ENST00000434626 151 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 RPL7P52-201ENST00000449200 742 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 RPL7L1P8-201ENST00000469911 741 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC021146.2-201ENST00000504736 556 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC093853.1-201ENST00000515689 483 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 SNORD46.2-201ENST00000516021 102 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC136777.2-201ENST00000522979 358 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 DERA-209ENST00000532964 854 ntTSL 5 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 MGST1-215ENST00000540056 546 ntTSL 3 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 MIR4424-201ENST00000585257 86 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC006006.1-201ENST00000603082 144 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC124303.1-201ENST00000605703 360 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC007546.1-201ENST00000619452 559 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AC097461.1-201ENST00000568928 2821 ntBASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.37□□□□□ -1.55
UBE3DQ7Z6J8 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 AC006206.1-201ENST00000544842 3387 ntBASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 AL121886.1-201ENST00000358609 435 ntBASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 RNU6-552P-201ENST00000362869 119 ntBASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 Y_RNA.187-201ENST00000363918 113 ntBASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 Y_RNA.339-201ENST00000365325 102 ntBASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 RNA5SP131-201ENST00000365452 119 ntBASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 RNY3P13-201ENST00000365542 102 ntBASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 Y_RNA.401-201ENST00000383965 117 ntBASIC5.36□□□□□ -1.55
UBE3DQ7Z6J8 AL583835.1-201ENST00000399570 407 ntBASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 217.1 ms