Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC3.72□□□□□ -1.81
PDLIM3Q53GG5 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
PDLIM3Q53GG5 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
PDLIM3Q53GG5 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC3.71□□□□□ -1.81
PDLIM3Q53GG5 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 Y_RNA.25-201ENST00000362528 102 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 SNORA71.3-201ENST00000362582 128 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 RNU6-921P-201ENST00000384361 107 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 RNU6-628P-201ENST00000410675 107 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 PTP4A1P5-201ENST00000420305 455 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC011233.1-201ENST00000422812 283 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 RPEP3-201ENST00000425462 676 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 OR4F13P-201ENST00000428478 931 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 CKS1BP5-201ENST00000434172 273 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AL138799.3-201ENST00000438968 350 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 Z77249.1-201ENST00000444622 1175 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AL162591.2-201ENST00000449634 317 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 RPL5P24-201ENST00000463742 885 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 TMED11P-201ENST00000479478 690 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 WBP1LP4-201ENST00000505043 344 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC091868.1-201ENST00000508746 304 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC010587.2-201ENST00000511727 448 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 RNU2-58P-201ENST00000516403 183 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC008694.2-201ENST00000517591 306 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 MRPL49P2-201ENST00000521066 465 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 MTND2P38-201ENST00000522536 667 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC023050.2-201ENST00000544968 387 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC069240.1-201ENST00000548774 375 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 DUXAP6-201ENST00000553858 601 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 DUXAP1-201ENST00000556632 463 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC105129.1-201ENST00000560250 297 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC009094.1-201ENST00000564443 426 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 MTCYBP28-201ENST00000566728 1132 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC021171.1-201ENST00000603137 706 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC025946.2-201ENST00000603398 234 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 YWHAQP7-201ENST00000603536 658 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 FAM27B-201ENST00000610601 213 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AL139418.1-201ENST00000613613 177 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC007490.1-201ENST00000624321 703 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 RNA5SP196-201ENST00000625967 102 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 MKKS-204ENST00000639674 192 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 KPNA2P2-201ENST00000419546 1489 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 MTCO1P24-201ENST00000515438 1558 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AP000776.1-201ENST00000530032 1663 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 AL442639.1-201ENST00000625030 1899 ntBASIC3.71□□□□□ -1.82
PDLIM3Q53GG5 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC104454.1-201ENST00000421341 1401 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 SUGT1P1-201ENST00000379514 476 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 RNU6-157P-201ENST00000383957 107 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 SNRPEP2-201ENST00000397592 279 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 EIF5P1-201ENST00000400019 1231 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 OR51AB1P-201ENST00000429046 620 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 MTND5P25-201ENST00000430499 799 ntBASIC3.7□□□□□ -1.82
PDLIM3Q53GG5 AC016831.4-201ENST00000438302 307 ntBASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms