Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC026427.2-201ENST00000506228 536 ntBASIC4.23□□□□□ -1.73
COL28A1Q2UY09 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 TRMT10BP1-201ENST00000519377 943 ntBASIC4.23□□□□□ -1.73
COL28A1Q2UY09 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 SLC2A13P1-201ENST00000531560 322 ntBASIC4.23□□□□□ -1.73
COL28A1Q2UY09 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 AC011471.1-201ENST00000585766 187 ntBASIC4.23□□□□□ -1.73
COL28A1Q2UY09 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 AC112230.1-201ENST00000604342 547 ntBASIC4.23□□□□□ -1.73
COL28A1Q2UY09 AL158042.1-201ENST00000605338 460 ntBASIC4.23□□□□□ -1.73
COL28A1Q2UY09 HSPE1P14-201ENST00000605812 302 ntBASIC4.23□□□□□ -1.73
COL28A1Q2UY09 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 AC090246.1-201ENST00000616499 426 ntBASIC4.23□□□□□ -1.73
COL28A1Q2UY09 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 MTND2P41-201ENST00000637599 773 ntBASIC4.23□□□□□ -1.73
COL28A1Q2UY09 MFSD8-242ENST00000641690 4199 ntBASIC4.23□□□□□ -1.73
COL28A1Q2UY09 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 MTND4P34-201ENST00000572715 1371 ntBASIC4.23□□□□□ -1.73
COL28A1Q2UY09 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 AL390862.1-201ENST00000635467 1469 ntBASIC4.23□□□□□ -1.73
COL28A1Q2UY09 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL28A1Q2UY09 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC006971.1-201ENST00000407916 4486 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 OR5P1P-201ENST00000299512 925 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 RNA5SP119-201ENST00000362715 117 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 RNU6-757P-201ENST00000410334 100 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC004552.1-201ENST00000419089 348 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 RPS15AP40-201ENST00000419621 391 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 RPL12P26-201ENST00000452430 487 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC133473.1-201ENST00000455173 299 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 RPS26P3-201ENST00000470205 348 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 RPL23AP65-201ENST00000475608 468 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC090543.2-201ENST00000483963 348 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC004057.1-201ENST00000485827 348 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AP000563.1-201ENST00000490865 758 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 RPS6P4-201ENST00000494693 758 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 RNF138P1-201ENST00000502765 546 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC010460.1-201ENST00000507087 466 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC016065.2-201ENST00000514530 444 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 RNU6-1129P-201ENST00000515964 104 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 ZNF705CP-201ENST00000530515 889 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 MTND3P12-201ENST00000559068 328 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC015912.2-201ENST00000571053 181 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC008638.3-201ENST00000603341 463 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 COX6CP4-201ENST00000605798 228 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 SNORA51-201ENST00000606420 132 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AP001521.1-201ENST00000609150 300 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 ZNF37BP-203ENST00000452306 1352 ntBASIC4.22□□□□□ -1.73
COL28A1Q2UY09 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.22□□□□□ -1.73
COL28A1Q2UY09 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC4.21□□□□□ -1.73
COL28A1Q2UY09 NF1-214ENST00000490416 1329 ntTSL 3 BASIC4.21□□□□□ -1.73
COL28A1Q2UY09 AC135352.1-201ENST00000506173 1418 ntBASIC4.21□□□□□ -1.73
COL28A1Q2UY09 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.21□□□□□ -1.73
COL28A1Q2UY09 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
COL28A1Q2UY09 AL391684.1-202ENST00000641293 1636 ntBASIC4.21□□□□□ -1.73
COL28A1Q2UY09 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
COL28A1Q2UY09 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 RNU6-931P-201ENST00000363850 107 ntBASIC4.21□□□□□ -1.74
COL28A1Q2UY09 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL28A1Q2UY09 RNU6-1226P-201ENST00000384317 107 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms