Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL4A5P29400 AC027287.1-201ENST00000553115 1453 ntBASIC3.33□□□□□ -1.88
COL4A5P29400 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.33□□□□□ -1.88
COL4A5P29400 RPS4XP7-201ENST00000406274 780 ntBASIC3.33□□□□□ -1.88
COL4A5P29400 Z98941.1-201ENST00000407764 100 ntBASIC3.33□□□□□ -1.88
COL4A5P29400 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC3.33□□□□□ -1.88
COL4A5P29400 AC006960.1-201ENST00000419980 153 ntBASIC3.33□□□□□ -1.88
COL4A5P29400 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.33□□□□□ -1.88
COL4A5P29400 AC009263.1-201ENST00000441193 1239 ntBASIC3.33□□□□□ -1.88
COL4A5P29400 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC3.33□□□□□ -1.88
COL4A5P29400 AC005351.1-201ENST00000511152 786 ntBASIC3.33□□□□□ -1.88
COL4A5P29400 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.33□□□□□ -1.88
COL4A5P29400 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.33□□□□□ -1.88
COL4A5P29400 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
COL4A5P29400 AC012020.1-201ENST00000624541 1728 ntBASIC3.32□□□□□ -1.88
COL4A5P29400 AC105402.1-201ENST00000413336 545 ntBASIC3.32□□□□□ -1.88
COL4A5P29400 RPL23AP23-201ENST00000452590 471 ntBASIC3.32□□□□□ -1.88
COL4A5P29400 snoU13.15-201ENST00000459407 104 ntBASIC3.32□□□□□ -1.88
COL4A5P29400 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC3.32□□□□□ -1.88
COL4A5P29400 AP001646.1-201ENST00000527936 915 ntBASIC3.32□□□□□ -1.88
COL4A5P29400 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL4A5P29400 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC3.32□□□□□ -1.88
COL4A5P29400 AC141257.3-201ENST00000572906 215 ntBASIC3.32□□□□□ -1.88
COL4A5P29400 AC098826.3-201ENST00000603823 466 ntBASIC3.32□□□□□ -1.88
COL4A5P29400 ELL2P4-201ENST00000446870 1376 ntBASIC3.32□□□□□ -1.88
COL4A5P29400 SNORD56.3-201ENST00000363507 71 ntBASIC3.31□□□□□ -1.88
COL4A5P29400 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A5P29400 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.31□□□□□ -1.88
COL4A5P29400 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A5P29400 AC093663.2-201ENST00000484625 313 ntBASIC3.31□□□□□ -1.88
COL4A5P29400 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.31□□□□□ -1.88
COL4A5P29400 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC3.31□□□□□ -1.88
COL4A5P29400 RNA5SP320-201ENST00000516263 124 ntBASIC3.31□□□□□ -1.88
COL4A5P29400 IGKV2D-23-201ENST00000518179 286 ntBASIC3.31□□□□□ -1.88
COL4A5P29400 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.31□□□□□ -1.88
COL4A5P29400 EEF1A1P37-201ENST00000522748 715 ntBASIC3.31□□□□□ -1.88
COL4A5P29400 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.31□□□□□ -1.88
COL4A5P29400 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A5P29400 AC007424.1-203ENST00000554613 687 ntBASIC3.31□□□□□ -1.88
COL4A5P29400 RNU6-84P-201ENST00000607737 102 ntBASIC3.31□□□□□ -1.88
COL4A5P29400 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.31□□□□□ -1.88
COL4A5P29400 AC006111.3-201ENST00000622137 383 ntBASIC3.31□□□□□ -1.88
COL4A5P29400 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A5P29400 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.31□□□□□ -1.88
COL4A5P29400 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A5P29400 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A5P29400 Y_RNA.238-201ENST00000364441 102 ntBASIC3.3□□□□□ -1.88
COL4A5P29400 SEPT7P2-202ENST00000398921 823 ntBASIC3.3□□□□□ -1.88
COL4A5P29400 RPL7P10-201ENST00000417407 739 ntBASIC3.3□□□□□ -1.88
COL4A5P29400 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A5P29400 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.3□□□□□ -1.88
COL4A5P29400 RPS29P21-201ENST00000496272 170 ntBASIC3.3□□□□□ -1.88
COL4A5P29400 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A5P29400 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A5P29400 RNU6-991P-201ENST00000516168 107 ntBASIC3.3□□□□□ -1.88
COL4A5P29400 UBTFL10-201ENST00000528532 562 ntBASIC3.3□□□□□ -1.88
COL4A5P29400 AC090312.2-201ENST00000582687 378 ntBASIC3.3□□□□□ -1.88
COL4A5P29400 AL355493.4-201ENST00000618530 292 ntBASIC3.3□□□□□ -1.88
COL4A5P29400 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.3□□□□□ -1.88
COL4A5P29400 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
COL4A5P29400 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A5P29400 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A5P29400 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A5P29400 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.3□□□□□ -1.88
COL4A5P29400 SMC4P1-201ENST00000414479 527 ntBASIC3.3□□□□□ -1.88
COL4A5P29400 AC112220.1-201ENST00000434628 355 ntBASIC3.3□□□□□ -1.88
COL4A5P29400 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A5P29400 RN7SL633P-201ENST00000488974 297 ntBASIC3.3□□□□□ -1.88
COL4A5P29400 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A5P29400 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A5P29400 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A5P29400 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.3□□□□□ -1.88
COL4A5P29400 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A5P29400 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A5P29400 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A5P29400 AC008725.1-201ENST00000605123 2263 ntBASIC3.29□□□□□ -1.88
COL4A5P29400 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
COL4A5P29400 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.29□□□□□ -1.88
COL4A5P29400 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.29□□□□□ -1.88
COL4A5P29400 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL4A5P29400 MIR518C-201ENST00000384822 101 ntBASIC3.29□□□□□ -1.88
COL4A5P29400 AL445213.1-201ENST00000412589 747 ntBASIC3.29□□□□□ -1.88
COL4A5P29400 RAP1BP1-201ENST00000412709 553 ntBASIC3.29□□□□□ -1.88
COL4A5P29400 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.29□□□□□ -1.88
COL4A5P29400 AL049610.1-201ENST00000423374 372 ntBASIC3.29□□□□□ -1.88
COL4A5P29400 NECAP1P2-201ENST00000455668 727 ntBASIC3.29□□□□□ -1.88
COL4A5P29400 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.29□□□□□ -1.88
COL4A5P29400 AC021205.1-201ENST00000468797 348 ntBASIC3.29□□□□□ -1.88
COL4A5P29400 AC021146.1-201ENST00000511202 716 ntBASIC3.29□□□□□ -1.88
COL4A5P29400 RN7SKP283-201ENST00000517197 270 ntBASIC3.29□□□□□ -1.88
COL4A5P29400 AP003102.1-201ENST00000525638 661 ntBASIC3.29□□□□□ -1.88
COL4A5P29400 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.29□□□□□ -1.88
COL4A5P29400 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.29□□□□□ -1.88
COL4A5P29400 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
COL4A5P29400 TAB3P1-202ENST00000452645 1634 ntBASIC3.28□□□□□ -1.88
COL4A5P29400 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A5P29400 MAPK10-373ENST00000641983 6772 ntBASIC3.28□□□□□ -1.88
COL4A5P29400 AC000123.3-201ENST00000624029 4975 ntBASIC3.28□□□□□ -1.88
COL4A5P29400 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL4A5P29400 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms