Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.11□□□□□ -1.91
USF1P22415 XIST_intron.1-201ENST00000619444 68 ntBASIC3.11□□□□□ -1.91
USF1P22415 AC091905.1-201ENST00000624400 311 ntBASIC3.11□□□□□ -1.91
USF1P22415 AC092608.3-201ENST00000625017 386 ntBASIC3.11□□□□□ -1.91
USF1P22415 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
USF1P22415 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.11□□□□□ -1.91
USF1P22415 AL133383.2-201ENST00000622958 2336 ntBASIC3.11□□□□□ -1.91
USF1P22415 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
USF1P22415 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.11□□□□□ -1.91
USF1P22415 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USF1P22415 AL157700.1-201ENST00000561973 1432 ntBASIC3.1□□□□□ -1.91
USF1P22415 AC107081.3-201ENST00000612715 2034 ntBASIC3.1□□□□□ -1.91
USF1P22415 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USF1P22415 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC3.1□□□□□ -1.91
USF1P22415 AP001148.1-201ENST00000624124 2359 ntBASIC3.1□□□□□ -1.91
USF1P22415 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USF1P22415 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USF1P22415 RNA5SP189-201ENST00000364920 115 ntBASIC3.1□□□□□ -1.91
USF1P22415 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USF1P22415 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.1□□□□□ -1.91
USF1P22415 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC3.1□□□□□ -1.91
USF1P22415 RNU6-1005P-201ENST00000384519 107 ntBASIC3.1□□□□□ -1.91
USF1P22415 RNVU1-14-201ENST00000384770 164 ntBASIC3.1□□□□□ -1.91
USF1P22415 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.1□□□□□ -1.91
USF1P22415 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.1□□□□□ -1.91
USF1P22415 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.1□□□□□ -1.91
USF1P22415 AC091390.3-201ENST00000426478 338 ntBASIC3.1□□□□□ -1.91
USF1P22415 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC3.1□□□□□ -1.91
USF1P22415 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.1□□□□□ -1.91
USF1P22415 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.1□□□□□ -1.91
USF1P22415 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC3.1□□□□□ -1.91
USF1P22415 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.1□□□□□ -1.91
USF1P22415 AC092641.1-201ENST00000440229 772 ntBASIC3.1□□□□□ -1.91
USF1P22415 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC3.1□□□□□ -1.91
USF1P22415 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.1□□□□□ -1.91
USF1P22415 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.1□□□□□ -1.91
USF1P22415 HESX1-202ENST00000473921 757 ntTSL 5 BASIC3.1□□□□□ -1.91
USF1P22415 AP000893.1-201ENST00000474462 794 ntBASIC3.1□□□□□ -1.91
USF1P22415 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC3.1□□□□□ -1.91
USF1P22415 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.1□□□□□ -1.91
USF1P22415 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.1□□□□□ -1.91
USF1P22415 AC104108.1-201ENST00000509930 412 ntBASIC3.1□□□□□ -1.91
USF1P22415 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.1□□□□□ -1.91
USF1P22415 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC3.1□□□□□ -1.91
USF1P22415 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.1□□□□□ -1.91
USF1P22415 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.1□□□□□ -1.91
USF1P22415 AP003717.3-201ENST00000544832 1180 ntBASIC3.1□□□□□ -1.91
USF1P22415 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.1□□□□□ -1.91
USF1P22415 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC3.1□□□□□ -1.91
USF1P22415 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.1□□□□□ -1.91
USF1P22415 AL731537.2-201ENST00000561565 951 ntBASIC3.1□□□□□ -1.91
USF1P22415 ATP5F1P7-201ENST00000567330 760 ntBASIC3.1□□□□□ -1.91
USF1P22415 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.1□□□□□ -1.91
USF1P22415 AL137849.1-201ENST00000604767 169 ntBASIC3.1□□□□□ -1.91
USF1P22415 SNORA62.6-201ENST00000606322 83 ntBASIC3.1□□□□□ -1.91
USF1P22415 MIR7851-201ENST00000610611 160 ntBASIC3.1□□□□□ -1.91
USF1P22415 AC099778.2-201ENST00000610904 211 ntBASIC3.1□□□□□ -1.91
USF1P22415 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.1□□□□□ -1.91
USF1P22415 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.1□□□□□ -1.91
USF1P22415 AL590396.2-201ENST00000636511 1041 ntBASIC3.1□□□□□ -1.91
USF1P22415 AL392088.2-201ENST00000637607 285 ntBASIC3.1□□□□□ -1.91
USF1P22415 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
USF1P22415 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USF1P22415 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
USF1P22415 MTND4P21-201ENST00000453886 1357 ntBASIC3.1□□□□□ -1.91
USF1P22415 CEP170P1-201ENST00000502249 4587 ntBASIC3.1□□□□□ -1.91
USF1P22415 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
USF1P22415 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
USF1P22415 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
USF1P22415 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.09□□□□□ -1.91
USF1P22415 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.09□□□□□ -1.91
USF1P22415 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
USF1P22415 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
USF1P22415 RNU6-1243P-201ENST00000364028 107 ntBASIC3.09□□□□□ -1.91
USF1P22415 RNA5SP424-201ENST00000390988 115 ntBASIC3.09□□□□□ -1.91
USF1P22415 RNU6-796P-201ENST00000391086 107 ntBASIC3.09□□□□□ -1.91
USF1P22415 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
USF1P22415 RPL7P60-201ENST00000397636 735 ntBASIC3.09□□□□□ -1.91
USF1P22415 DSTNP4-201ENST00000399472 474 ntBASIC3.09□□□□□ -1.91
USF1P22415 EIF5P1-201ENST00000400019 1231 ntBASIC3.09□□□□□ -1.91
USF1P22415 HSPE1P8-201ENST00000406997 288 ntBASIC3.09□□□□□ -1.91
USF1P22415 UBE2V1P15-201ENST00000407776 448 ntBASIC3.09□□□□□ -1.91
USF1P22415 SNORA11C-201ENST00000408532 129 ntBASIC3.09□□□□□ -1.91
USF1P22415 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.09□□□□□ -1.91
USF1P22415 RNU2-37P-201ENST00000410695 177 ntBASIC3.09□□□□□ -1.91
USF1P22415 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC3.09□□□□□ -1.91
USF1P22415 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.09□□□□□ -1.91
USF1P22415 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.09□□□□□ -1.91
USF1P22415 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.09□□□□□ -1.91
USF1P22415 YWHAZP8-201ENST00000436935 731 ntBASIC3.09□□□□□ -1.91
USF1P22415 MTCYBP31-201ENST00000438855 1122 ntBASIC3.09□□□□□ -1.91
USF1P22415 NPM1P49-201ENST00000448027 714 ntBASIC3.09□□□□□ -1.91
USF1P22415 AC006480.1-201ENST00000449887 378 ntBASIC3.09□□□□□ -1.91
USF1P22415 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.09□□□□□ -1.91
USF1P22415 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
USF1P22415 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.09□□□□□ -1.91
USF1P22415 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
USF1P22415 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.09□□□□□ -1.91
USF1P22415 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.09□□□□□ -1.91
USF1P22415 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms