Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RNA5SP107-201ENST00000411358 122 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AL133445.1-201ENST00000467051 452 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AC090602.1-201ENST00000469695 252 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 RN7SL583P-201ENST00000475692 287 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 SIAH1P1-201ENST00000479411 923 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 RPS15AP36-201ENST00000492022 382 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AC105384.2-201ENST00000508433 640 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AC090572.1-201ENST00000519251 160 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AK6P1-201ENST00000540219 478 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AC018630.1-201ENST00000541376 925 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AL162413.1-201ENST00000603198 110 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 IMMP1LP3-201ENST00000604197 224 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AL034351.1-201ENST00000605288 668 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 HMGN2P28-201ENST00000606102 262 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 AP001330.5-201ENST00000607176 411 ntBASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
TRAIPQ9BWF2 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
TRAIPQ9BWF2 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
TRAIPQ9BWF2 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
TRAIPQ9BWF2 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC6.21□□□□□ -1.41
TRAIPQ9BWF2 EEF1A1P36-201ENST00000427807 1351 ntBASIC6.21□□□□□ -1.41
TRAIPQ9BWF2 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
TRAIPQ9BWF2 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.41
TRAIPQ9BWF2 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
TRAIPQ9BWF2 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 HSPE1P11-201ENST00000339579 310 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 RNU6-1090P-201ENST00000364065 94 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 BPHL-201ENST00000380368 797 ntTSL 5 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 RPL23AP30-201ENST00000432419 501 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AL390119.1-201ENST00000440329 312 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 COPS8P2-201ENST00000473228 627 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AC006539.1-201ENST00000481419 501 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 FAM60DP-201ENST00000524174 632 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 NANOGP3-201ENST00000605855 286 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AP001596.2-201ENST00000608410 312 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 SSX9-202ENST00000608568 580 ntTSL 4 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AC090607.5-201ENST00000615692 224 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AL136313.1-201ENST00000624804 202 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 DHX40P1-201ENST00000588725 1412 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
TRAIPQ9BWF2 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 Y_RNA.159-201ENST00000363674 87 ntBASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 RNU1-39P-201ENST00000383897 165 ntBASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 RPL21P67-201ENST00000402896 478 ntBASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 SNORA11B-201ENST00000408175 129 ntBASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 RNU2-9P-201ENST00000410194 145 ntBASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 RNU2-43P-201ENST00000410306 190 ntBASIC6.2□□□□□ -1.42
TRAIPQ9BWF2 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms